Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9030 | 3' | -59.4 | NC_002512.2 | + | 227060 | 0.69 | 0.664114 |
Target: 5'- cGCCGucGUCCGGGcccGCGCCCGCgC-CGGg- -3' miRNA: 3'- -UGGU--UAGGCCU---CGCGGGCG-GaGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 184648 | 0.69 | 0.673895 |
Target: 5'- gGCgAGUCCGcGGGCGCCgCGCCgaaaucCGGUc -3' miRNA: 3'- -UGgUUAGGC-CUCGCGG-GCGGa-----GCUAa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 22144 | 0.69 | 0.664114 |
Target: 5'- uCCAccCCGGAGCGuccCCCGCCgaCGAUg -3' miRNA: 3'- uGGUuaGGCCUCGC---GGGCGGa-GCUAa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 128131 | 0.68 | 0.759557 |
Target: 5'- cGCCGA--CGGAGCGCCCGggccaccaCCUCGc-- -3' miRNA: 3'- -UGGUUagGCCUCGCGGGC--------GGAGCuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 111808 | 0.68 | 0.750347 |
Target: 5'- cGCCGGcgCCGGAGcCGCCC-CCUCc--- -3' miRNA: 3'- -UGGUUa-GGCCUC-GCGGGcGGAGcuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 146080 | 0.68 | 0.74942 |
Target: 5'- cGCCGccgCCGGcGCGCCCGacgcgguCCUCGGc- -3' miRNA: 3'- -UGGUua-GGCCuCGCGGGC-------GGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 211188 | 0.68 | 0.722172 |
Target: 5'- cGCCcugCuCGGGGUGCCCGCCgcccaCGAg- -3' miRNA: 3'- -UGGuuaG-GCCUCGCGGGCGGa----GCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 176079 | 0.68 | 0.712627 |
Target: 5'- cGCCGAcaccUCGGAGCGCagCGCCUgGAUc -3' miRNA: 3'- -UGGUUa---GGCCUCGCGg-GCGGAgCUAa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 213538 | 0.68 | 0.747565 |
Target: 5'- uGCCc--UCGGAGCGUcugcugcgcgggguCCGCCUCGAg- -3' miRNA: 3'- -UGGuuaGGCCUCGCG--------------GGCGGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 44016 | 0.68 | 0.722172 |
Target: 5'- uGCCAGcggcCCGaGGCGCCCuCCUCGAc- -3' miRNA: 3'- -UGGUUa---GGCcUCGCGGGcGGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 78667 | 0.68 | 0.722172 |
Target: 5'- aGCCGGcgCCGGGGCucggagccuaaGUCCGCUUCGGa- -3' miRNA: 3'- -UGGUUa-GGCCUCG-----------CGGGCGGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 153009 | 0.68 | 0.731646 |
Target: 5'- aACCAuuucguGUCCGGGaggauggucGCGCCCuaCUCGAa- -3' miRNA: 3'- -UGGU------UAGGCCU---------CGCGGGcgGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 45508 | 0.68 | 0.750347 |
Target: 5'- gGCCAcgCCGaaAGCGCCCGCggCGGg- -3' miRNA: 3'- -UGGUuaGGCc-UCGCGGGCGgaGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 135339 | 0.68 | 0.758641 |
Target: 5'- aGCCGcgCCGGGGUGCugcuggccgucgaCCGCUUCGu-- -3' miRNA: 3'- -UGGUuaGGCCUCGCG-------------GGCGGAGCuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 19063 | 0.68 | 0.759557 |
Target: 5'- gGCCGugucccaCCGGAGCGCgaGCC-CGAUg -3' miRNA: 3'- -UGGUua-----GGCCUCGCGggCGGaGCUAa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 184933 | 0.68 | 0.712627 |
Target: 5'- gACCGguGUUCGGAGUccGCCUGgCUCGAg- -3' miRNA: 3'- -UGGU--UAGGCCUCG--CGGGCgGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 137803 | 0.67 | 0.768664 |
Target: 5'- gGCCGcgcGUCCGGcGGcCGUCCGUCUCGu-- -3' miRNA: 3'- -UGGU---UAGGCC-UC-GCGGGCGGAGCuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 73986 | 0.67 | 0.795277 |
Target: 5'- gUCGGcgCCGGAcucguccccGCGCCCGCCgUCGGg- -3' miRNA: 3'- uGGUUa-GGCCU---------CGCGGGCGG-AGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 153778 | 0.67 | 0.803887 |
Target: 5'- cACCAccCCGGcGCcCCCGCCUCa--- -3' miRNA: 3'- -UGGUuaGGCCuCGcGGGCGGAGcuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 102737 | 0.67 | 0.812353 |
Target: 5'- uUCGAcCCGGAGCGCgCGCCcuaCGGa- -3' miRNA: 3'- uGGUUaGGCCUCGCGgGCGGa--GCUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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