miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 3' -59.4 NC_002512.2 + 184648 0.69 0.673895
Target:  5'- gGCgAGUCCGcGGGCGCCgCGCCgaaaucCGGUc -3'
miRNA:   3'- -UGgUUAGGC-CUCGCGG-GCGGa-----GCUAa -5'
9030 3' -59.4 NC_002512.2 + 190940 0.69 0.693356
Target:  5'- aACCAGacCCGGgcgcacgcgGGCGCCCGCCgCGGc- -3'
miRNA:   3'- -UGGUUa-GGCC---------UCGCGGGCGGaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 214402 0.69 0.693356
Target:  5'- gGCCAcuucgggCCGGAGCGCgCCGCgCcCGAg- -3'
miRNA:   3'- -UGGUua-----GGCCUCGCG-GGCG-GaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 184933 0.68 0.712627
Target:  5'- gACCGguGUUCGGAGUccGCCUGgCUCGAg- -3'
miRNA:   3'- -UGGU--UAGGCCUCG--CGGGCgGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 176079 0.68 0.712627
Target:  5'- cGCCGAcaccUCGGAGCGCagCGCCUgGAUc -3'
miRNA:   3'- -UGGUUa---GGCCUCGCGg-GCGGAgCUAa -5'
9030 3' -59.4 NC_002512.2 + 78667 0.68 0.722172
Target:  5'- aGCCGGcgCCGGGGCucggagccuaaGUCCGCUUCGGa- -3'
miRNA:   3'- -UGGUUa-GGCCUCG-----------CGGGCGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 44016 0.68 0.722172
Target:  5'- uGCCAGcggcCCGaGGCGCCCuCCUCGAc- -3'
miRNA:   3'- -UGGUUa---GGCcUCGCGGGcGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 211188 0.68 0.722172
Target:  5'- cGCCcugCuCGGGGUGCCCGCCgcccaCGAg- -3'
miRNA:   3'- -UGGuuaG-GCCUCGCGGGCGGa----GCUaa -5'
9030 3' -59.4 NC_002512.2 + 153009 0.68 0.731646
Target:  5'- aACCAuuucguGUCCGGGaggauggucGCGCCCuaCUCGAa- -3'
miRNA:   3'- -UGGU------UAGGCCU---------CGCGGGcgGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 213538 0.68 0.747565
Target:  5'- uGCCc--UCGGAGCGUcugcugcgcgggguCCGCCUCGAg- -3'
miRNA:   3'- -UGGuuaGGCCUCGCG--------------GGCGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 146080 0.68 0.74942
Target:  5'- cGCCGccgCCGGcGCGCCCGacgcgguCCUCGGc- -3'
miRNA:   3'- -UGGUua-GGCCuCGCGGGC-------GGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 45508 0.68 0.750347
Target:  5'- gGCCAcgCCGaaAGCGCCCGCggCGGg- -3'
miRNA:   3'- -UGGUuaGGCc-UCGCGGGCGgaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 111808 0.68 0.750347
Target:  5'- cGCCGGcgCCGGAGcCGCCC-CCUCc--- -3'
miRNA:   3'- -UGGUUa-GGCCUC-GCGGGcGGAGcuaa -5'
9030 3' -59.4 NC_002512.2 + 135339 0.68 0.758641
Target:  5'- aGCCGcgCCGGGGUGCugcuggccgucgaCCGCUUCGu-- -3'
miRNA:   3'- -UGGUuaGGCCUCGCG-------------GGCGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 19063 0.68 0.759557
Target:  5'- gGCCGugucccaCCGGAGCGCgaGCC-CGAUg -3'
miRNA:   3'- -UGGUua-----GGCCUCGCGggCGGaGCUAa -5'
9030 3' -59.4 NC_002512.2 + 128131 0.68 0.759557
Target:  5'- cGCCGA--CGGAGCGCCCGggccaccaCCUCGc-- -3'
miRNA:   3'- -UGGUUagGCCUCGCGGGC--------GGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 137803 0.67 0.768664
Target:  5'- gGCCGcgcGUCCGGcGGcCGUCCGUCUCGu-- -3'
miRNA:   3'- -UGGU---UAGGCC-UC-GCGGGCGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 58076 0.67 0.777658
Target:  5'- uGCCGggCagcaGGAGCGCgCGCCgUCGGg- -3'
miRNA:   3'- -UGGUuaGg---CCUCGCGgGCGG-AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 220325 0.67 0.777658
Target:  5'- gGCCGGgcUCCGGGGgGCCggacgGCCUCGu-- -3'
miRNA:   3'- -UGGUU--AGGCCUCgCGGg----CGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 45268 0.67 0.777658
Target:  5'- cGCCGG--CGGGGCGCUCGCgCUCGu-- -3'
miRNA:   3'- -UGGUUagGCCUCGCGGGCG-GAGCuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.