miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 3' -59.4 NC_002512.2 + 166440 0.66 0.819844
Target:  5'- cGCCGuccUCCGGgggcgacGGCGCCgGgCUCGAg- -3'
miRNA:   3'- -UGGUu--AGGCC-------UCGCGGgCgGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 127825 0.67 0.812353
Target:  5'- cCCGGcUCCGGgaggucgucggcGGCGUCCGCCgCGAa- -3'
miRNA:   3'- uGGUU-AGGCC------------UCGCGGGCGGaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 102737 0.67 0.812353
Target:  5'- uUCGAcCCGGAGCGCgCGCCcuaCGGa- -3'
miRNA:   3'- uGGUUaGGCCUCGCGgGCGGa--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 152062 0.67 0.811513
Target:  5'- gACCGGUCgCGGucaucgccguccuAGCGCCCGCgUCc--- -3'
miRNA:   3'- -UGGUUAG-GCC-------------UCGCGGGCGgAGcuaa -5'
9030 3' -59.4 NC_002512.2 + 153778 0.67 0.803887
Target:  5'- cACCAccCCGGcGCcCCCGCCUCa--- -3'
miRNA:   3'- -UGGUuaGGCCuCGcGGGCGGAGcuaa -5'
9030 3' -59.4 NC_002512.2 + 211898 0.67 0.795277
Target:  5'- cACCu-UCCGGGGCuGCCgCGUCgUCGAg- -3'
miRNA:   3'- -UGGuuAGGCCUCG-CGG-GCGG-AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 119717 0.67 0.795277
Target:  5'- gGCCGG-CCGGccguGCGCCCGCa-CGAc- -3'
miRNA:   3'- -UGGUUaGGCCu---CGCGGGCGgaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 73986 0.67 0.795277
Target:  5'- gUCGGcgCCGGAcucguccccGCGCCCGCCgUCGGg- -3'
miRNA:   3'- uGGUUa-GGCCU---------CGCGGGCGG-AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 58076 0.67 0.777658
Target:  5'- uGCCGggCagcaGGAGCGCgCGCCgUCGGg- -3'
miRNA:   3'- -UGGUuaGg---CCUCGCGgGCGG-AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 45268 0.67 0.777658
Target:  5'- cGCCGG--CGGGGCGCUCGCgCUCGu-- -3'
miRNA:   3'- -UGGUUagGCCUCGCGGGCG-GAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 220325 0.67 0.777658
Target:  5'- gGCCGGgcUCCGGGGgGCCggacgGCCUCGu-- -3'
miRNA:   3'- -UGGUU--AGGCCUCgCGGg----CGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 137803 0.67 0.768664
Target:  5'- gGCCGcgcGUCCGGcGGcCGUCCGUCUCGu-- -3'
miRNA:   3'- -UGGU---UAGGCC-UC-GCGGGCGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 19063 0.68 0.759557
Target:  5'- gGCCGugucccaCCGGAGCGCgaGCC-CGAUg -3'
miRNA:   3'- -UGGUua-----GGCCUCGCGggCGGaGCUAa -5'
9030 3' -59.4 NC_002512.2 + 128131 0.68 0.759557
Target:  5'- cGCCGA--CGGAGCGCCCGggccaccaCCUCGc-- -3'
miRNA:   3'- -UGGUUagGCCUCGCGGGC--------GGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 135339 0.68 0.758641
Target:  5'- aGCCGcgCCGGGGUGCugcuggccgucgaCCGCUUCGu-- -3'
miRNA:   3'- -UGGUuaGGCCUCGCG-------------GGCGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 45508 0.68 0.750347
Target:  5'- gGCCAcgCCGaaAGCGCCCGCggCGGg- -3'
miRNA:   3'- -UGGUuaGGCc-UCGCGGGCGgaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 111808 0.68 0.750347
Target:  5'- cGCCGGcgCCGGAGcCGCCC-CCUCc--- -3'
miRNA:   3'- -UGGUUa-GGCCUC-GCGGGcGGAGcuaa -5'
9030 3' -59.4 NC_002512.2 + 146080 0.68 0.74942
Target:  5'- cGCCGccgCCGGcGCGCCCGacgcgguCCUCGGc- -3'
miRNA:   3'- -UGGUua-GGCCuCGCGGGC-------GGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 213538 0.68 0.747565
Target:  5'- uGCCc--UCGGAGCGUcugcugcgcgggguCCGCCUCGAg- -3'
miRNA:   3'- -UGGuuaGGCCUCGCG--------------GGCGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 153009 0.68 0.731646
Target:  5'- aACCAuuucguGUCCGGGaggauggucGCGCCCuaCUCGAa- -3'
miRNA:   3'- -UGGU------UAGGCCU---------CGCGGGcgGAGCUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.