miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 3' -59.4 NC_002512.2 + 98156 0.66 0.836817
Target:  5'- cACCGGUUCGGcggucccGCGCCCGUCaUCGu-- -3'
miRNA:   3'- -UGGUUAGGCCu------CGCGGGCGG-AGCuaa -5'
9030 3' -59.4 NC_002512.2 + 102737 0.67 0.812353
Target:  5'- uUCGAcCCGGAGCGCgCGCCcuaCGGa- -3'
miRNA:   3'- uGGUUaGGCCUCGCGgGCGGa--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 104935 0.7 0.644487
Target:  5'- gGCCuccucGUCCGGcgucggcgcGGCGCCgGCCUCGu-- -3'
miRNA:   3'- -UGGu----UAGGCC---------UCGCGGgCGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 111490 0.69 0.664114
Target:  5'- uGCCAguagacggagaGUCCGGA-CGUCCGCCggCGGUa -3'
miRNA:   3'- -UGGU-----------UAGGCCUcGCGGGCGGa-GCUAa -5'
9030 3' -59.4 NC_002512.2 + 111808 0.68 0.750347
Target:  5'- cGCCGGcgCCGGAGcCGCCC-CCUCc--- -3'
miRNA:   3'- -UGGUUa-GGCCUC-GCGGGcGGAGcuaa -5'
9030 3' -59.4 NC_002512.2 + 113140 0.76 0.319335
Target:  5'- gACCGcgCgCGGGGCGCCgGCCUCGc-- -3'
miRNA:   3'- -UGGUuaG-GCCUCGCGGgCGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 114013 0.73 0.445659
Target:  5'- gUCGucGUCCGGcGgGCCCGCCUCGGc- -3'
miRNA:   3'- uGGU--UAGGCCuCgCGGGCGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 119717 0.67 0.795277
Target:  5'- gGCCGG-CCGGccguGCGCCCGCa-CGAc- -3'
miRNA:   3'- -UGGUUaGGCCu---CGCGGGCGgaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 121377 0.66 0.844637
Target:  5'- gGCCGGUCgGGcGCcggGCCCGgCCUCGc-- -3'
miRNA:   3'- -UGGUUAGgCCuCG---CGGGC-GGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 126498 0.7 0.634657
Target:  5'- gGCC---CCGGAGCGCgagCGCCUCGGc- -3'
miRNA:   3'- -UGGuuaGGCCUCGCGg--GCGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 127825 0.67 0.812353
Target:  5'- cCCGGcUCCGGgaggucgucggcGGCGUCCGCCgCGAa- -3'
miRNA:   3'- uGGUU-AGGCC------------UCGCGGGCGGaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 128089 0.66 0.820668
Target:  5'- aGCCuccUCGGaAGCGCuCCGCCgUCGAg- -3'
miRNA:   3'- -UGGuuaGGCC-UCGCG-GGCGG-AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 128131 0.68 0.759557
Target:  5'- cGCCGA--CGGAGCGCCCGggccaccaCCUCGc-- -3'
miRNA:   3'- -UGGUUagGCCUCGCGGGC--------GGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 128382 0.66 0.844637
Target:  5'- cCCGucgCCGGcGGCGgacCCCGUCUCGAg- -3'
miRNA:   3'- uGGUua-GGCC-UCGC---GGGCGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 132459 0.66 0.836817
Target:  5'- gGCgGGUCCggGGAGCGCgCGUCUCu--- -3'
miRNA:   3'- -UGgUUAGG--CCUCGCGgGCGGAGcuaa -5'
9030 3' -59.4 NC_002512.2 + 134965 0.71 0.575872
Target:  5'- cGCCGugAUCCGGAGCuGUCUGCCcggCGAc- -3'
miRNA:   3'- -UGGU--UAGGCCUCG-CGGGCGGa--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 135209 0.72 0.506227
Target:  5'- cGCCAGcgggCCGGGGgGCCCcccggccccgggccGCCUCGAg- -3'
miRNA:   3'- -UGGUUa---GGCCUCgCGGG--------------CGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 135339 0.68 0.758641
Target:  5'- aGCCGcgCCGGGGUGCugcuggccgucgaCCGCUUCGu-- -3'
miRNA:   3'- -UGGUuaGGCCUCGCG-------------GGCGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 137803 0.67 0.768664
Target:  5'- gGCCGcgcGUCCGGcGGcCGUCCGUCUCGu-- -3'
miRNA:   3'- -UGGU---UAGGCC-UC-GCGGGCGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 139288 0.66 0.836817
Target:  5'- gGCgAAgg-GGGGCGCCCGCCcCGGg- -3'
miRNA:   3'- -UGgUUaggCCUCGCGGGCGGaGCUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.