miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 3' -59.4 NC_002512.2 + 11646 0.65 0.85752
Target:  5'- cGCCGAcCCGGAcauauaucggcgccGCgGCCCGCCgCGGc- -3'
miRNA:   3'- -UGGUUaGGCCU--------------CG-CGGGCGGaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 19063 0.68 0.759557
Target:  5'- gGCCGugucccaCCGGAGCGCgaGCC-CGAUg -3'
miRNA:   3'- -UGGUua-----GGCCUCGCGggCGGaGCUAa -5'
9030 3' -59.4 NC_002512.2 + 21089 0.66 0.844637
Target:  5'- cCCGcUCCGGGGCGaCCGCCgUCu--- -3'
miRNA:   3'- uGGUuAGGCCUCGCgGGCGG-AGcuaa -5'
9030 3' -59.4 NC_002512.2 + 22144 0.69 0.664114
Target:  5'- uCCAccCCGGAGCGuccCCCGCCgaCGAUg -3'
miRNA:   3'- uGGUuaGGCCUCGC---GGGCGGa-GCUAa -5'
9030 3' -59.4 NC_002512.2 + 27268 0.7 0.644487
Target:  5'- gUCGGUCCGGuguGCGCuCUGCCcUCGAa- -3'
miRNA:   3'- uGGUUAGGCCu--CGCG-GGCGG-AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 39372 0.66 0.852279
Target:  5'- gACCAgcucGUCgagGGAGUGCCgGCaCUCGAg- -3'
miRNA:   3'- -UGGU----UAGg--CCUCGCGGgCG-GAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 44016 0.68 0.722172
Target:  5'- uGCCAGcggcCCGaGGCGCCCuCCUCGAc- -3'
miRNA:   3'- -UGGUUa---GGCcUCGCGGGcGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 45224 0.66 0.836817
Target:  5'- cGCCGA-CCGGAuuucggcgcgGCGCCCGCggaCUCGc-- -3'
miRNA:   3'- -UGGUUaGGCCU----------CGCGGGCG---GAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 45268 0.67 0.777658
Target:  5'- cGCCGG--CGGGGCGCUCGCgCUCGu-- -3'
miRNA:   3'- -UGGUUagGCCUCGCGGGCG-GAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 45508 0.68 0.750347
Target:  5'- gGCCAcgCCGaaAGCGCCCGCggCGGg- -3'
miRNA:   3'- -UGGUuaGGCc-UCGCGGGCGgaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 58076 0.67 0.777658
Target:  5'- uGCCGggCagcaGGAGCGCgCGCCgUCGGg- -3'
miRNA:   3'- -UGGUuaGg---CCUCGCGgGCGG-AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 71560 0.66 0.828825
Target:  5'- -aCGGUCCGGAGCGCggacucgCGCCggaCGAc- -3'
miRNA:   3'- ugGUUAGGCCUCGCGg------GCGGa--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 72827 0.66 0.852279
Target:  5'- cCCGGaccCCGGGaCGCCCGCCUUGc-- -3'
miRNA:   3'- uGGUUa--GGCCUcGCGGGCGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 73986 0.67 0.795277
Target:  5'- gUCGGcgCCGGAcucguccccGCGCCCGCCgUCGGg- -3'
miRNA:   3'- uGGUUa-GGCCU---------CGCGGGCGG-AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 74614 0.7 0.634657
Target:  5'- gACCGGagCGGAGCGCgagaCCGCCgcgCGAc- -3'
miRNA:   3'- -UGGUUagGCCUCGCG----GGCGGa--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 75298 0.72 0.518395
Target:  5'- gACCAAUCCGGAGCGgCgGaUUCGAa- -3'
miRNA:   3'- -UGGUUAGGCCUCGCgGgCgGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 78667 0.68 0.722172
Target:  5'- aGCCGGcgCCGGGGCucggagccuaaGUCCGCUUCGGa- -3'
miRNA:   3'- -UGGUUa-GGCCUCG-----------CGGGCGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 82407 0.71 0.585613
Target:  5'- cGCCcGUCCGcAGCGCCCGCg-CGAa- -3'
miRNA:   3'- -UGGuUAGGCcUCGCGGGCGgaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 91960 0.66 0.84231
Target:  5'- cGCCAgggcggagcggcacGUCCGGAGgGCCgCGUC-CGGg- -3'
miRNA:   3'- -UGGU--------------UAGGCCUCgCGG-GCGGaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 97307 0.66 0.828825
Target:  5'- cGCCGAacccCUGGccGCGCCCGCCggggUCGAg- -3'
miRNA:   3'- -UGGUUa---GGCCu-CGCGGGCGG----AGCUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.