miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 3' -59.4 NC_002512.2 + 45268 0.67 0.777658
Target:  5'- cGCCGG--CGGGGCGCUCGCgCUCGu-- -3'
miRNA:   3'- -UGGUUagGCCUCGCGGGCG-GAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 44016 0.68 0.722172
Target:  5'- uGCCAGcggcCCGaGGCGCCCuCCUCGAc- -3'
miRNA:   3'- -UGGUUa---GGCcUCGCGGGcGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 78667 0.68 0.722172
Target:  5'- aGCCGGcgCCGGGGCucggagccuaaGUCCGCUUCGGa- -3'
miRNA:   3'- -UGGUUa-GGCCUCG-----------CGGGCGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 153009 0.68 0.731646
Target:  5'- aACCAuuucguGUCCGGGaggauggucGCGCCCuaCUCGAa- -3'
miRNA:   3'- -UGGU------UAGGCCU---------CGCGGGcgGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 45508 0.68 0.750347
Target:  5'- gGCCAcgCCGaaAGCGCCCGCggCGGg- -3'
miRNA:   3'- -UGGUuaGGCc-UCGCGGGCGgaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 135339 0.68 0.758641
Target:  5'- aGCCGcgCCGGGGUGCugcuggccgucgaCCGCUUCGu-- -3'
miRNA:   3'- -UGGUuaGGCCUCGCG-------------GGCGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 19063 0.68 0.759557
Target:  5'- gGCCGugucccaCCGGAGCGCgaGCC-CGAUg -3'
miRNA:   3'- -UGGUua-----GGCCUCGCGggCGGaGCUAa -5'
9030 3' -59.4 NC_002512.2 + 137803 0.67 0.768664
Target:  5'- gGCCGcgcGUCCGGcGGcCGUCCGUCUCGu-- -3'
miRNA:   3'- -UGGU---UAGGCC-UC-GCGGGCGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 58076 0.67 0.777658
Target:  5'- uGCCGggCagcaGGAGCGCgCGCCgUCGGg- -3'
miRNA:   3'- -UGGUuaGg---CCUCGCGgGCGG-AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 22144 0.69 0.664114
Target:  5'- uCCAccCCGGAGCGuccCCCGCCgaCGAUg -3'
miRNA:   3'- uGGUuaGGCCUCGC---GGGCGGa-GCUAa -5'
9030 3' -59.4 NC_002512.2 + 104935 0.7 0.644487
Target:  5'- gGCCuccucGUCCGGcgucggcgcGGCGCCgGCCUCGu-- -3'
miRNA:   3'- -UGGu----UAGGCC---------UCGCGGgCGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 27268 0.7 0.644487
Target:  5'- gUCGGUCCGGuguGCGCuCUGCCcUCGAa- -3'
miRNA:   3'- uGGUUAGGCCu--CGCG-GGCGG-AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 154320 0.72 0.499726
Target:  5'- gACCGggAUCCGGAGuCGUCCGCgUCGu-- -3'
miRNA:   3'- -UGGU--UAGGCCUC-GCGGGCGgAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 135209 0.72 0.506227
Target:  5'- cGCCAGcgggCCGGGGgGCCCcccggccccgggccGCCUCGAg- -3'
miRNA:   3'- -UGGUUa---GGCCUCgCGGG--------------CGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 75298 0.72 0.518395
Target:  5'- gACCAAUCCGGAGCGgCgGaUUCGAa- -3'
miRNA:   3'- -UGGUUAGGCCUCGCgGgCgGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 155294 0.71 0.546894
Target:  5'- aGCCGA--CGGAGgGCCCcgGCCUCGAg- -3'
miRNA:   3'- -UGGUUagGCCUCgCGGG--CGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 154539 0.71 0.556507
Target:  5'- uACCGGUCCGccGCcUCCGCCUCGGUc -3'
miRNA:   3'- -UGGUUAGGCcuCGcGGGCGGAGCUAa -5'
9030 3' -59.4 NC_002512.2 + 134965 0.71 0.575872
Target:  5'- cGCCGugAUCCGGAGCuGUCUGCCcggCGAc- -3'
miRNA:   3'- -UGGU--UAGGCCUCG-CGGGCGGa--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 74614 0.7 0.634657
Target:  5'- gACCGGagCGGAGCGCgagaCCGCCgcgCGAc- -3'
miRNA:   3'- -UGGUUagGCCUCGCG----GGCGGa--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 126498 0.7 0.634657
Target:  5'- gGCC---CCGGAGCGCgagCGCCUCGGc- -3'
miRNA:   3'- -UGGuuaGGCCUCGCGg--GCGGAGCUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.