Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9030 | 3' | -59.4 | NC_002512.2 | + | 154547 | 1.04 | 0.004192 |
Target: 5'- gACCAAUCCGGAGCGCCCGCCUCGAUUu -3' miRNA: 3'- -UGGUUAGGCCUCGCGGGCGGAGCUAA- -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 217581 | 0.8 | 0.174692 |
Target: 5'- aGCCGGUCCGGcGGCG-CCGCCUCGGg- -3' miRNA: 3'- -UGGUUAGGCC-UCGCgGGCGGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 113140 | 0.76 | 0.319335 |
Target: 5'- gACCGcgCgCGGGGCGCCgGCCUCGc-- -3' miRNA: 3'- -UGGUuaG-GCCUCGCGGgCGGAGCuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 142075 | 0.75 | 0.355763 |
Target: 5'- uCCGA-CCGccGCGCCCGCCUCGAc- -3' miRNA: 3'- uGGUUaGGCcuCGCGGGCGGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 154460 | 0.74 | 0.378984 |
Target: 5'- cCCGAUCCGGA-CGuCCCGCCcUCGAg- -3' miRNA: 3'- uGGUUAGGCCUcGC-GGGCGG-AGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 114013 | 0.73 | 0.445659 |
Target: 5'- gUCGucGUCCGGcGgGCCCGCCUCGGc- -3' miRNA: 3'- uGGU--UAGGCCuCgCGGGCGGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 154320 | 0.72 | 0.499726 |
Target: 5'- gACCGggAUCCGGAGuCGUCCGCgUCGu-- -3' miRNA: 3'- -UGGU--UAGGCCUC-GCGGGCGgAGCuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 135209 | 0.72 | 0.506227 |
Target: 5'- cGCCAGcgggCCGGGGgGCCCcccggccccgggccGCCUCGAg- -3' miRNA: 3'- -UGGUUa---GGCCUCgCGGG--------------CGGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 75298 | 0.72 | 0.518395 |
Target: 5'- gACCAAUCCGGAGCGgCgGaUUCGAa- -3' miRNA: 3'- -UGGUUAGGCCUCGCgGgCgGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 155294 | 0.71 | 0.546894 |
Target: 5'- aGCCGA--CGGAGgGCCCcgGCCUCGAg- -3' miRNA: 3'- -UGGUUagGCCUCgCGGG--CGGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 154539 | 0.71 | 0.556507 |
Target: 5'- uACCGGUCCGccGCcUCCGCCUCGGUc -3' miRNA: 3'- -UGGUUAGGCcuCGcGGGCGGAGCUAa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 134965 | 0.71 | 0.575872 |
Target: 5'- cGCCGugAUCCGGAGCuGUCUGCCcggCGAc- -3' miRNA: 3'- -UGGU--UAGGCCUCG-CGGGCGGa--GCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 82407 | 0.71 | 0.585613 |
Target: 5'- cGCCcGUCCGcAGCGCCCGCg-CGAa- -3' miRNA: 3'- -UGGuUAGGCcUCGCGGGCGgaGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 126498 | 0.7 | 0.634657 |
Target: 5'- gGCC---CCGGAGCGCgagCGCCUCGGc- -3' miRNA: 3'- -UGGuuaGGCCUCGCGg--GCGGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 74614 | 0.7 | 0.634657 |
Target: 5'- gACCGGagCGGAGCGCgagaCCGCCgcgCGAc- -3' miRNA: 3'- -UGGUUagGCCUCGCG----GGCGGa--GCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 27268 | 0.7 | 0.644487 |
Target: 5'- gUCGGUCCGGuguGCGCuCUGCCcUCGAa- -3' miRNA: 3'- uGGUUAGGCCu--CGCG-GGCGG-AGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 104935 | 0.7 | 0.644487 |
Target: 5'- gGCCuccucGUCCGGcgucggcgcGGCGCCgGCCUCGu-- -3' miRNA: 3'- -UGGu----UAGGCC---------UCGCGGgCGGAGCuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 22144 | 0.69 | 0.664114 |
Target: 5'- uCCAccCCGGAGCGuccCCCGCCgaCGAUg -3' miRNA: 3'- uGGUuaGGCCUCGC---GGGCGGa-GCUAa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 227060 | 0.69 | 0.664114 |
Target: 5'- cGCCGucGUCCGGGcccGCGCCCGCgC-CGGg- -3' miRNA: 3'- -UGGU--UAGGCCU---CGCGGGCG-GaGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 111490 | 0.69 | 0.664114 |
Target: 5'- uGCCAguagacggagaGUCCGGA-CGUCCGCCggCGGUa -3' miRNA: 3'- -UGGU-----------UAGGCCUcGCGGGCGGa-GCUAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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