miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 3' -59.4 NC_002512.2 + 219664 0.66 0.852279
Target:  5'- cGCCcgucggGAUCUGG-GCGCgCCGCC-CGAg- -3'
miRNA:   3'- -UGG------UUAGGCCuCGCG-GGCGGaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 211188 0.68 0.722172
Target:  5'- cGCCcugCuCGGGGUGCCCGCCgcccaCGAg- -3'
miRNA:   3'- -UGGuuaG-GCCUCGCGGGCGGa----GCUaa -5'
9030 3' -59.4 NC_002512.2 + 184933 0.68 0.712627
Target:  5'- gACCGguGUUCGGAGUccGCCUGgCUCGAg- -3'
miRNA:   3'- -UGGU--UAGGCCUCG--CGGGCgGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 154547 1.04 0.004192
Target:  5'- gACCAAUCCGGAGCGCCCGCCUCGAUUu -3'
miRNA:   3'- -UGGUUAGGCCUCGCGGGCGGAGCUAA- -5'
9030 3' -59.4 NC_002512.2 + 132459 0.66 0.836817
Target:  5'- gGCgGGUCCggGGAGCGCgCGUCUCu--- -3'
miRNA:   3'- -UGgUUAGG--CCUCGCGgGCGGAGcuaa -5'
9030 3' -59.4 NC_002512.2 + 202330 0.66 0.825582
Target:  5'- cGCCAcUCCuacacgcuacuuAGCGCCCGgCUCGAUUg -3'
miRNA:   3'- -UGGUuAGGcc----------UCGCGGGCgGAGCUAA- -5'
9030 3' -59.4 NC_002512.2 + 166440 0.66 0.819844
Target:  5'- cGCCGuccUCCGGgggcgacGGCGCCgGgCUCGAg- -3'
miRNA:   3'- -UGGUu--AGGCC-------UCGCGGgCgGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 127825 0.67 0.812353
Target:  5'- cCCGGcUCCGGgaggucgucggcGGCGUCCGCCgCGAa- -3'
miRNA:   3'- uGGUU-AGGCC------------UCGCGGGCGGaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 211898 0.67 0.795277
Target:  5'- cACCu-UCCGGGGCuGCCgCGUCgUCGAg- -3'
miRNA:   3'- -UGGuuAGGCCUCG-CGG-GCGG-AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 213538 0.68 0.747565
Target:  5'- uGCCc--UCGGAGCGUcugcugcgcgggguCCGCCUCGAg- -3'
miRNA:   3'- -UGGuuaGGCCUCGCG--------------GGCGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 128131 0.68 0.759557
Target:  5'- cGCCGA--CGGAGCGCCCGggccaccaCCUCGc-- -3'
miRNA:   3'- -UGGUUagGCCUCGCGGGC--------GGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 119717 0.67 0.795277
Target:  5'- gGCCGG-CCGGccguGCGCCCGCa-CGAc- -3'
miRNA:   3'- -UGGUUaGGCCu---CGCGGGCGgaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 149515 0.66 0.852279
Target:  5'- gGCCGcggCCGGAGCggGCCgGCCagGAg- -3'
miRNA:   3'- -UGGUua-GGCCUCG--CGGgCGGagCUaa -5'
9030 3' -59.4 NC_002512.2 + 111808 0.68 0.750347
Target:  5'- cGCCGGcgCCGGAGcCGCCC-CCUCc--- -3'
miRNA:   3'- -UGGUUa-GGCCUC-GCGGGcGGAGcuaa -5'
9030 3' -59.4 NC_002512.2 + 128382 0.66 0.844637
Target:  5'- cCCGucgCCGGcGGCGgacCCCGUCUCGAg- -3'
miRNA:   3'- uGGUua-GGCC-UCGC---GGGCGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 152062 0.67 0.811513
Target:  5'- gACCGGUCgCGGucaucgccguccuAGCGCCCGCgUCc--- -3'
miRNA:   3'- -UGGUUAG-GCC-------------UCGCGGGCGgAGcuaa -5'
9030 3' -59.4 NC_002512.2 + 146080 0.68 0.74942
Target:  5'- cGCCGccgCCGGcGCGCCCGacgcgguCCUCGGc- -3'
miRNA:   3'- -UGGUua-GGCCuCGCGGGC-------GGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 176079 0.68 0.712627
Target:  5'- cGCCGAcaccUCGGAGCGCagCGCCUgGAUc -3'
miRNA:   3'- -UGGUUa---GGCCUCGCGg-GCGGAgCUAa -5'
9030 3' -59.4 NC_002512.2 + 184471 0.66 0.836817
Target:  5'- gGCCGGcgCCGccgucGAGCGCCCGCaCgagCGAc- -3'
miRNA:   3'- -UGGUUa-GGC-----CUCGCGGGCG-Ga--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 208723 0.66 0.820668
Target:  5'- gACCAgAUCgGGAGCGCC-GCCgacCGGa- -3'
miRNA:   3'- -UGGU-UAGgCCUCGCGGgCGGa--GCUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.