miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 3' -59.4 NC_002512.2 + 227060 0.69 0.664114
Target:  5'- cGCCGucGUCCGGGcccGCGCCCGCgC-CGGg- -3'
miRNA:   3'- -UGGU--UAGGCCU---CGCGGGCG-GaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 220325 0.67 0.777658
Target:  5'- gGCCGGgcUCCGGGGgGCCggacgGCCUCGu-- -3'
miRNA:   3'- -UGGUU--AGGCCUCgCGGg----CGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 219664 0.66 0.852279
Target:  5'- cGCCcgucggGAUCUGG-GCGCgCCGCC-CGAg- -3'
miRNA:   3'- -UGG------UUAGGCCuCGCG-GGCGGaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 217581 0.8 0.174692
Target:  5'- aGCCGGUCCGGcGGCG-CCGCCUCGGg- -3'
miRNA:   3'- -UGGUUAGGCC-UCGCgGGCGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 214402 0.69 0.693356
Target:  5'- gGCCAcuucgggCCGGAGCGCgCCGCgCcCGAg- -3'
miRNA:   3'- -UGGUua-----GGCCUCGCG-GGCG-GaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 213538 0.68 0.747565
Target:  5'- uGCCc--UCGGAGCGUcugcugcgcgggguCCGCCUCGAg- -3'
miRNA:   3'- -UGGuuaGGCCUCGCG--------------GGCGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 211898 0.67 0.795277
Target:  5'- cACCu-UCCGGGGCuGCCgCGUCgUCGAg- -3'
miRNA:   3'- -UGGuuAGGCCUCG-CGG-GCGG-AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 211188 0.68 0.722172
Target:  5'- cGCCcugCuCGGGGUGCCCGCCgcccaCGAg- -3'
miRNA:   3'- -UGGuuaG-GCCUCGCGGGCGGa----GCUaa -5'
9030 3' -59.4 NC_002512.2 + 208723 0.66 0.820668
Target:  5'- gACCAgAUCgGGAGCGCC-GCCgacCGGa- -3'
miRNA:   3'- -UGGU-UAGgCCUCGCGGgCGGa--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 202330 0.66 0.825582
Target:  5'- cGCCAcUCCuacacgcuacuuAGCGCCCGgCUCGAUUg -3'
miRNA:   3'- -UGGUuAGGcc----------UCGCGGGCgGAGCUAA- -5'
9030 3' -59.4 NC_002512.2 + 190940 0.69 0.693356
Target:  5'- aACCAGacCCGGgcgcacgcgGGCGCCCGCCgCGGc- -3'
miRNA:   3'- -UGGUUa-GGCC---------UCGCGGGCGGaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 184933 0.68 0.712627
Target:  5'- gACCGguGUUCGGAGUccGCCUGgCUCGAg- -3'
miRNA:   3'- -UGGU--UAGGCCUCG--CGGGCgGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 184648 0.69 0.673895
Target:  5'- gGCgAGUCCGcGGGCGCCgCGCCgaaaucCGGUc -3'
miRNA:   3'- -UGgUUAGGC-CUCGCGG-GCGGa-----GCUAa -5'
9030 3' -59.4 NC_002512.2 + 184471 0.66 0.836817
Target:  5'- gGCCGGcgCCGccgucGAGCGCCCGCaCgagCGAc- -3'
miRNA:   3'- -UGGUUa-GGC-----CUCGCGGGCG-Ga--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 176079 0.68 0.712627
Target:  5'- cGCCGAcaccUCGGAGCGCagCGCCUgGAUc -3'
miRNA:   3'- -UGGUUa---GGCCUCGCGg-GCGGAgCUAa -5'
9030 3' -59.4 NC_002512.2 + 166440 0.66 0.819844
Target:  5'- cGCCGuccUCCGGgggcgacGGCGCCgGgCUCGAg- -3'
miRNA:   3'- -UGGUu--AGGCC-------UCGCGGgCgGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 156544 0.66 0.844637
Target:  5'- cGCCGGUUCGGAGCGCgugaCgGCUgagCGGa- -3'
miRNA:   3'- -UGGUUAGGCCUCGCG----GgCGGa--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 155294 0.71 0.546894
Target:  5'- aGCCGA--CGGAGgGCCCcgGCCUCGAg- -3'
miRNA:   3'- -UGGUUagGCCUCgCGGG--CGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 154547 1.04 0.004192
Target:  5'- gACCAAUCCGGAGCGCCCGCCUCGAUUu -3'
miRNA:   3'- -UGGUUAGGCCUCGCGGGCGGAGCUAA- -5'
9030 3' -59.4 NC_002512.2 + 154539 0.71 0.556507
Target:  5'- uACCGGUCCGccGCcUCCGCCUCGGUc -3'
miRNA:   3'- -UGGUUAGGCcuCGcGGGCGGAGCUAa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.