miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 5' -52.5 NC_002512.2 + 205888 0.66 0.995292
Target:  5'- uCGcGUcgCGggUCC-CCGCUCgCGGGa -3'
miRNA:   3'- -GCuUAaaGCuuAGGcGGCGAG-GCCUa -5'
9030 5' -52.5 NC_002512.2 + 220393 0.66 0.995292
Target:  5'- cCGGccgUCGucuacCCGCCGCUCgCGGGc -3'
miRNA:   3'- -GCUuaaAGCuua--GGCGGCGAG-GCCUa -5'
9030 5' -52.5 NC_002512.2 + 119332 0.66 0.995292
Target:  5'- -----cUCGAuggCCGCCgagguGCUCCGGGc -3'
miRNA:   3'- gcuuaaAGCUua-GGCGG-----CGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 118618 0.66 0.99455
Target:  5'- gGGAcgUCGAcaucaagcucGUCCGCgugccgcccgaCGCUCCGGGc -3'
miRNA:   3'- gCUUaaAGCU----------UAGGCG-----------GCGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 2213 0.66 0.99455
Target:  5'- uCGGucgccggCGGcgCCGCCGCucuuccUCCGGAc -3'
miRNA:   3'- -GCUuaaa---GCUuaGGCGGCG------AGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 137873 0.66 0.993716
Target:  5'- cCGAcgcccgCGAGUCCGCCGCcggcgacgCgGGAg -3'
miRNA:   3'- -GCUuaaa--GCUUAGGCGGCGa-------GgCCUa -5'
9030 5' -52.5 NC_002512.2 + 71007 0.66 0.993716
Target:  5'- aCGAAggaCGGGgggCCGCCGCcggCCGGu- -3'
miRNA:   3'- -GCUUaaaGCUUa--GGCGGCGa--GGCCua -5'
9030 5' -52.5 NC_002512.2 + 109061 0.66 0.992782
Target:  5'- aCGAc---CGGAcCCGCCGCgucCCGGGUc -3'
miRNA:   3'- -GCUuaaaGCUUaGGCGGCGa--GGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 135851 0.66 0.992782
Target:  5'- cCGAAga---GAUCCGCCGCgaaaccgagcgUCCGGGUc -3'
miRNA:   3'- -GCUUaaagcUUAGGCGGCG-----------AGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 154528 0.66 0.991741
Target:  5'- aCGAAgaUCGcuaccGGUCCGCCGcCUCCGc-- -3'
miRNA:   3'- -GCUUaaAGC-----UUAGGCGGC-GAGGCcua -5'
9030 5' -52.5 NC_002512.2 + 114279 0.66 0.991741
Target:  5'- ------gCGggUCCGCCGCgUCCGu-- -3'
miRNA:   3'- gcuuaaaGCuuAGGCGGCG-AGGCcua -5'
9030 5' -52.5 NC_002512.2 + 60811 0.66 0.991741
Target:  5'- gCGGGccgCGAcgCCGCCGC-CgCGGAg -3'
miRNA:   3'- -GCUUaaaGCUuaGGCGGCGaG-GCCUa -5'
9030 5' -52.5 NC_002512.2 + 20824 0.67 0.990585
Target:  5'- aCGAAgacgucgUCGGAggagCCGUcggaauCGCUCCGGGa -3'
miRNA:   3'- -GCUUaa-----AGCUUa---GGCG------GCGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 10450 0.67 0.990585
Target:  5'- aCGGGggcgCGGAggaggccgCCGCCGCcCCGGGc -3'
miRNA:   3'- -GCUUaaa-GCUUa-------GGCGGCGaGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 82179 0.67 0.989305
Target:  5'- gGAGggUCGAgagcccGUCCGCCGUcgggCCGGc- -3'
miRNA:   3'- gCUUaaAGCU------UAGGCGGCGa---GGCCua -5'
9030 5' -52.5 NC_002512.2 + 218138 0.67 0.989305
Target:  5'- ----cUUCG--UCUGuuGCUCCGGAUa -3'
miRNA:   3'- gcuuaAAGCuuAGGCggCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 98563 0.67 0.987894
Target:  5'- aGAGggUCGGA-CgGCCGUugaUCCGGAg -3'
miRNA:   3'- gCUUaaAGCUUaGgCGGCG---AGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 96682 0.67 0.986342
Target:  5'- aCGAgg-UCGAucucugUCGCCGCgugCCGGAc -3'
miRNA:   3'- -GCUuaaAGCUua----GGCGGCGa--GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 41095 0.67 0.984643
Target:  5'- gCGA---UCGGggCCGCCGaggCCGGAg -3'
miRNA:   3'- -GCUuaaAGCUuaGGCGGCga-GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 137339 0.67 0.984643
Target:  5'- cCGAcgUcgUCGccgcggCCGCCGCggCCGGGUa -3'
miRNA:   3'- -GCUuaA--AGCuua---GGCGGCGa-GGCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.