miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 5' -52.5 NC_002512.2 + 224064 0.69 0.96478
Target:  5'- gCGAccAUUUCGAcgCCGCCGaa-CGGGg -3'
miRNA:   3'- -GCU--UAAAGCUuaGGCGGCgagGCCUa -5'
9030 5' -52.5 NC_002512.2 + 220393 0.66 0.995292
Target:  5'- cCGGccgUCGucuacCCGCCGCUCgCGGGc -3'
miRNA:   3'- -GCUuaaAGCuua--GGCGGCGAG-GCCUa -5'
9030 5' -52.5 NC_002512.2 + 218138 0.67 0.989305
Target:  5'- ----cUUCG--UCUGuuGCUCCGGAUa -3'
miRNA:   3'- gcuuaAAGCuuAGGCggCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 205888 0.66 0.995292
Target:  5'- uCGcGUcgCGggUCC-CCGCUCgCGGGa -3'
miRNA:   3'- -GCuUAaaGCuuAGGcGGCGAG-GCCUa -5'
9030 5' -52.5 NC_002512.2 + 158324 0.74 0.803782
Target:  5'- cCGGcg--CGAGUCCG-CGCUCCGGAc -3'
miRNA:   3'- -GCUuaaaGCUUAGGCgGCGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 156993 0.69 0.96141
Target:  5'- ----cUUCGg--CCGCCGCUUCGGGc -3'
miRNA:   3'- gcuuaAAGCuuaGGCGGCGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 155063 0.77 0.628117
Target:  5'- cCGAGUugUUCGuccgCCGCCGCUgCCGGGUg -3'
miRNA:   3'- -GCUUA--AAGCuua-GGCGGCGA-GGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 154581 1.05 0.016272
Target:  5'- uCGAAUUUCGAAUCCGCCGCUCCGGAUu -3'
miRNA:   3'- -GCUUAAAGCUUAGGCGGCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 154528 0.66 0.991741
Target:  5'- aCGAAgaUCGcuaccGGUCCGCCGcCUCCGc-- -3'
miRNA:   3'- -GCUUaaAGC-----UUAGGCGGC-GAGGCcua -5'
9030 5' -52.5 NC_002512.2 + 145412 0.72 0.876258
Target:  5'- cCGggUcuucUUCGGcucGUCCGCCGCggugCUGGAc -3'
miRNA:   3'- -GCuuA----AAGCU---UAGGCGGCGa---GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 140867 0.7 0.933528
Target:  5'- gGAGUUcgcUCGGAUCgCGCugcccgacguccccgCGCUCCGGGUc -3'
miRNA:   3'- gCUUAA---AGCUUAG-GCG---------------GCGAGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 137873 0.66 0.993716
Target:  5'- cCGAcgcccgCGAGUCCGCCGCcggcgacgCgGGAg -3'
miRNA:   3'- -GCUuaaa--GCUUAGGCGGCGa-------GgCCUa -5'
9030 5' -52.5 NC_002512.2 + 137339 0.67 0.984643
Target:  5'- cCGAcgUcgUCGccgcggCCGCCGCggCCGGGUa -3'
miRNA:   3'- -GCUuaA--AGCuua---GGCGGCGa-GGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 135851 0.66 0.992782
Target:  5'- cCGAAga---GAUCCGCCGCgaaaccgagcgUCCGGGUc -3'
miRNA:   3'- -GCUUaaagcUUAGGCGGCG-----------AGGCCUA- -5'
9030 5' -52.5 NC_002512.2 + 135094 0.71 0.91519
Target:  5'- aCGGAgcagUCG-AUCCaggaGCUGCUCCGGAc -3'
miRNA:   3'- -GCUUaa--AGCuUAGG----CGGCGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 131068 0.72 0.876258
Target:  5'- cCGGAgg-CcGAUCCGUCGCUCCGGc- -3'
miRNA:   3'- -GCUUaaaGcUUAGGCGGCGAGGCCua -5'
9030 5' -52.5 NC_002512.2 + 127835 0.7 0.936481
Target:  5'- gGAGgucgUCGGcggcGUCCGCCGCgaagCUGGAc -3'
miRNA:   3'- gCUUaa--AGCU----UAGGCGGCGa---GGCCUa -5'
9030 5' -52.5 NC_002512.2 + 126325 0.7 0.931513
Target:  5'- uGGAcgaCGAggCCGCCGCgUCCGGGa -3'
miRNA:   3'- gCUUaaaGCUuaGGCGGCG-AGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 119332 0.66 0.995292
Target:  5'- -----cUCGAuggCCGCCgagguGCUCCGGGc -3'
miRNA:   3'- gcuuaaAGCUua-GGCGG-----CGAGGCCUa -5'
9030 5' -52.5 NC_002512.2 + 118618 0.66 0.99455
Target:  5'- gGGAcgUCGAcaucaagcucGUCCGCgugccgcccgaCGCUCCGGGc -3'
miRNA:   3'- gCUUaaAGCU----------UAGGCG-----------GCGAGGCCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.