Results 41 - 60 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 67963 | 0.67 | 0.930794 |
Target: 5'- cGCCGGUucgccguGGcguCC-GCCGGaggAGGGCCg -3' miRNA: 3'- aUGGCCAu------CCu--GGaUGGCCa--UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 108428 | 0.67 | 0.920404 |
Target: 5'- cGCCGcccGGGGCCggggGCCGGgGGGuCCc -3' miRNA: 3'- aUGGCca-UCCUGGa---UGGCCaUCCuGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 8827 | 0.67 | 0.930794 |
Target: 5'- cGCCGGagcuuGGGCCagacgggcucgcUGCCGGgcGGcACCc -3' miRNA: 3'- aUGGCCau---CCUGG------------AUGGCCauCC-UGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 93464 | 0.67 | 0.925711 |
Target: 5'- cGCCGGgaucguggcGGaGACCUACUucggGGUAucGGACCu -3' miRNA: 3'- aUGGCCa--------UC-CUGGAUGG----CCAU--CCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 151884 | 0.67 | 0.914875 |
Target: 5'- cGCCGGcgauccgcGGAUCguuuCCGGUAGGcauGCCg -3' miRNA: 3'- aUGGCCau------CCUGGau--GGCCAUCC---UGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 189005 | 0.67 | 0.920404 |
Target: 5'- cACCGGUA--ACU--CCGaGUAGGACCa -3' miRNA: 3'- aUGGCCAUccUGGauGGC-CAUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 60268 | 0.67 | 0.920945 |
Target: 5'- cACCu---GGACCUGCCGGccgaccugaagaacaAGGACCu -3' miRNA: 3'- aUGGccauCCUGGAUGGCCa--------------UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 55033 | 0.67 | 0.925711 |
Target: 5'- aGCCGGUcGGGccGCCUACCGacGGGAg- -3' miRNA: 3'- aUGGCCA-UCC--UGGAUGGCcaUCCUgg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 36413 | 0.67 | 0.930794 |
Target: 5'- gGCCGucguGGGCCUcgucCCGG-AGGGCCc -3' miRNA: 3'- aUGGCcau-CCUGGAu---GGCCaUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 94574 | 0.67 | 0.920404 |
Target: 5'- cGCCGaccucgGGGACC-GCCGGacaggcgaacUGGGGCCc -3' miRNA: 3'- aUGGCca----UCCUGGaUGGCC----------AUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 97979 | 0.67 | 0.930296 |
Target: 5'- cGCCGGUacgccccgGGGACCUucgacgagcacguGCUGGU-GG-CCg -3' miRNA: 3'- aUGGCCA--------UCCUGGA-------------UGGCCAuCCuGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 142031 | 0.67 | 0.925711 |
Target: 5'- gGCCGGgggccGGcGACCcGCCGcG-AGGGCCc -3' miRNA: 3'- aUGGCCa----UC-CUGGaUGGC-CaUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 43646 | 0.68 | 0.89696 |
Target: 5'- gACCGaGgaccGGGACCUcGCCcucGGUGGcGGCCg -3' miRNA: 3'- aUGGC-Ca---UCCUGGA-UGG---CCAUC-CUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 115872 | 0.68 | 0.877109 |
Target: 5'- -cCCGGUgccgcugcGGGGCCgacGgCGGcGGGACCa -3' miRNA: 3'- auGGCCA--------UCCUGGa--UgGCCaUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 134754 | 0.68 | 0.877109 |
Target: 5'- cGCCGGggcGGACCguCCGGUucgucggcGGGCCc -3' miRNA: 3'- aUGGCCau-CCUGGauGGCCAu-------CCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 134522 | 0.68 | 0.895061 |
Target: 5'- cGCCGGUuacgacGGGACCUAUCcccucuucgacuuccUGGGGCCg -3' miRNA: 3'- aUGGCCA------UCCUGGAUGGcc-------------AUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 75726 | 0.68 | 0.89696 |
Target: 5'- aACCacagGGUAccGCCUACCGGaAGGACa -3' miRNA: 3'- aUGG----CCAUccUGGAUGGCCaUCCUGg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 68515 | 0.68 | 0.909123 |
Target: 5'- aAgCGGUA-GACCUGCUGGcccAGGugCg -3' miRNA: 3'- aUgGCCAUcCUGGAUGGCCa--UCCugG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 70169 | 0.68 | 0.909123 |
Target: 5'- cGCCGGUAGuACCUcucCCGGUcccGGugCc -3' miRNA: 3'- aUGGCCAUCcUGGAu--GGCCAu--CCugG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 98536 | 0.68 | 0.903151 |
Target: 5'- cGCCGGcUGGGACCUcgcCCGGcguuccgcGGAUCc -3' miRNA: 3'- aUGGCC-AUCCUGGAu--GGCCau------CCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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