Results 21 - 40 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 127179 | 0.67 | 0.67372 |
Target: 5'- -gCAGG-GUCCGGGccACUgCGUCGCCg -3' miRNA: 3'- caGUCCuCGGGCUC--UGGgGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 205655 | 0.67 | 0.692628 |
Target: 5'- cGUCGGcGGGCCCGAcGCCUCGgacaGCUc -3' miRNA: 3'- -CAGUC-CUCGGGCUcUGGGGCag--CGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 223329 | 0.66 | 0.720643 |
Target: 5'- gGUCGGGAGgaCGGGACCCUcagguUCGUCUu -3' miRNA: 3'- -CAGUCCUCggGCUCUGGGGc----AGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 136442 | 0.66 | 0.74716 |
Target: 5'- --gAGGGGaCCCGGGGCCacuacauCCG-CGCCg -3' miRNA: 3'- cagUCCUC-GGGCUCUGG-------GGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 117116 | 0.68 | 0.616503 |
Target: 5'- -aCAGcGGCaCGGGGCCCCGUCGgCg -3' miRNA: 3'- caGUCcUCGgGCUCUGGGGCAGCgGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 95708 | 0.68 | 0.634648 |
Target: 5'- -aCGGGGGgCCGGGAggggaagacggcuCCCCGUcccCGCCg -3' miRNA: 3'- caGUCCUCgGGCUCU-------------GGGGCA---GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 111665 | 0.67 | 0.70202 |
Target: 5'- cGUCcccGAGCaCGAgGGCCCCGUCGCa- -3' miRNA: 3'- -CAGuc-CUCGgGCU-CUGGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 194533 | 0.66 | 0.748062 |
Target: 5'- aUCAuGGAgGCCCGGGACaaCCGUaacCGCCc -3' miRNA: 3'- cAGU-CCU-CGGGCUCUGg-GGCA---GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 134630 | 0.68 | 0.635603 |
Target: 5'- uUCAGGAGCCgCGcGGCCCUccgGaCGCCc -3' miRNA: 3'- cAGUCCUCGG-GCuCUGGGG---CaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 155676 | 0.66 | 0.757035 |
Target: 5'- cGUCGGGA--CCGcGGCCCacggaCGUCGCCg -3' miRNA: 3'- -CAGUCCUcgGGCuCUGGG-----GCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 218030 | 0.67 | 0.696391 |
Target: 5'- -gUAGGGGUCCuccgcgucccuCCCCGUCGCCg -3' miRNA: 3'- caGUCCUCGGGcucu-------GGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 213008 | 0.67 | 0.664218 |
Target: 5'- cGUC-GG-GCCCGGGGCCCucucgaggugCGUcCGCCg -3' miRNA: 3'- -CAGuCCuCGGGCUCUGGG----------GCA-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 147443 | 0.66 | 0.711361 |
Target: 5'- uUCGGGAGCgggaCCGAcGCCCCcUCGUCc -3' miRNA: 3'- cAGUCCUCG----GGCUcUGGGGcAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 123174 | 0.66 | 0.720643 |
Target: 5'- -aCAGGAGCgcggucaucCCgGAGAgCCCCaUCGCCg -3' miRNA: 3'- caGUCCUCG---------GG-CUCU-GGGGcAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 87978 | 0.66 | 0.729859 |
Target: 5'- cGUCGGG-GCCgCGGcGCCCCGaCGCg- -3' miRNA: 3'- -CAGUCCuCGG-GCUcUGGGGCaGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 146806 | 0.66 | 0.739001 |
Target: 5'- --gAGGAgGCCCGGGACCuggagaCCuucgcgcgcgagGUCGCCUg -3' miRNA: 3'- cagUCCU-CGGGCUCUGG------GG------------CAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 95980 | 0.69 | 0.587946 |
Target: 5'- -gCAGGAgguaggccagcGCCCGGGACCgCCGgccgaGCCg -3' miRNA: 3'- caGUCCU-----------CGGGCUCUGG-GGCag---CGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 148677 | 0.68 | 0.606966 |
Target: 5'- -cCAGcGGgCCGuGGCCCuCGUCGCCg -3' miRNA: 3'- caGUCcUCgGGCuCUGGG-GCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 225815 | 0.68 | 0.616503 |
Target: 5'- -cCGGGuGGCCUGGGACCUCGa-GCCg -3' miRNA: 3'- caGUCC-UCGGGCUCUGGGGCagCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 172277 | 0.68 | 0.626051 |
Target: 5'- cUCGGucGCCCGGGACaucugCCGUCGCg- -3' miRNA: 3'- cAGUCcuCGGGCUCUGg----GGCAGCGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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