Results 21 - 40 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 119575 | 0.71 | 0.460111 |
Target: 5'- -gCGGGAGCCCGgcGGGuCCCCucgCGCCa -3' miRNA: 3'- caGUCCUCGGGC--UCU-GGGGca-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 135221 | 0.71 | 0.460111 |
Target: 5'- --gGGGGGCCCcccGGCCCCGggcCGCCUc -3' miRNA: 3'- cagUCCUCGGGcu-CUGGGGCa--GCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 42192 | 0.71 | 0.434588 |
Target: 5'- gGUCGGGGGUUCGGGuuCCCGgUGCCUc -3' miRNA: 3'- -CAGUCCUCGGGCUCugGGGCaGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 127935 | 0.71 | 0.426263 |
Target: 5'- -gUAGGGuaCCCGAGGCCCCGuUCGCUc -3' miRNA: 3'- caGUCCUc-GGGCUCUGGGGC-AGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 68144 | 0.71 | 0.43208 |
Target: 5'- -gCAGGAGCggcgccucCCGAuuguaggucaagacGAUCCCGUCGCCg -3' miRNA: 3'- caGUCCUCG--------GGCU--------------CUGGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 216185 | 0.7 | 0.522529 |
Target: 5'- cUCGGGAucgcGCCCGuGAUCaccgccgcggCCGUCGCCUc -3' miRNA: 3'- cAGUCCU----CGGGCuCUGG----------GGCAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 217763 | 0.7 | 0.486407 |
Target: 5'- -cCccGGGCCCGu--CCCCGUCGCCg -3' miRNA: 3'- caGucCUCGGGCucuGGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 165265 | 0.7 | 0.486407 |
Target: 5'- cGUCGcGGAGCCCcGGACCCCuuucagCGUCUc -3' miRNA: 3'- -CAGU-CCUCGGGcUCUGGGGca----GCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 211974 | 0.7 | 0.495331 |
Target: 5'- cGUCAGGAcgcgGCCgucguccuCGGGGCCgCCGcCGCCUa -3' miRNA: 3'- -CAGUCCU----CGG--------GCUCUGG-GGCaGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 206974 | 0.7 | 0.494436 |
Target: 5'- -gCAGGAagaagccGCCCGGGAUgCCCGUgGCCc -3' miRNA: 3'- caGUCCU-------CGGGCUCUG-GGGCAgCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 130291 | 0.7 | 0.477561 |
Target: 5'- ---cGGGGCCCGGGACgugCCGUaCGCCg -3' miRNA: 3'- caguCCUCGGGCUCUGg--GGCA-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 226485 | 0.7 | 0.495331 |
Target: 5'- ---cGGGGCCCGGGcgcuCCCC-UCGCCg -3' miRNA: 3'- caguCCUCGGGCUCu---GGGGcAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 29707 | 0.7 | 0.477561 |
Target: 5'- cGUCucggAGGAGCCCauGACCgUGUCGCCc -3' miRNA: 3'- -CAG----UCCUCGGGcuCUGGgGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 3139 | 0.7 | 0.521613 |
Target: 5'- cGUCGuccggccGGAGCCCGGucCCgCCGUCGUCg -3' miRNA: 3'- -CAGU-------CCUCGGGCUcuGG-GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 99659 | 0.7 | 0.504328 |
Target: 5'- ---cGGGGCCCaGAGGuuCCCCGcCGCCg -3' miRNA: 3'- caguCCUCGGG-CUCU--GGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 101184 | 0.7 | 0.485519 |
Target: 5'- uUCAGGAugguguuGUCCGAGACgCCGgcguUCGCCa -3' miRNA: 3'- cAGUCCU-------CGGGCUCUGgGGC----AGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 96547 | 0.69 | 0.531724 |
Target: 5'- ---cGGGGCCgGGGAUCCCGgaCGCCa -3' miRNA: 3'- caguCCUCGGgCUCUGGGGCa-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 8365 | 0.69 | 0.587946 |
Target: 5'- -gCGGGAGCgCCGAgGAUCCgCGgCGCCg -3' miRNA: 3'- caGUCCUCG-GGCU-CUGGG-GCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 16568 | 0.69 | 0.572808 |
Target: 5'- cGUCGGGcAGCCCGuAGGCCaggaaaucgacgaggUCGUCgGCCa -3' miRNA: 3'- -CAGUCC-UCGGGC-UCUGG---------------GGCAG-CGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 2166 | 0.69 | 0.569038 |
Target: 5'- gGUCgAGGAGUCgGGGAccguaccgcgcCCCCGcCGCCg -3' miRNA: 3'- -CAG-UCCUCGGgCUCU-----------GGGGCaGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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