miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 5' -52.6 NC_002512.2 + 151275 1.07 0.010869
Target:  5'- gUCAUCCAAGAUGGCGCCGGACGAAAAa -3'
miRNA:   3'- -AGUAGGUUCUACCGCGGCCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 57046 0.81 0.414761
Target:  5'- gCGUCCGacgaccGGggGGCGCCGGGCGAAc- -3'
miRNA:   3'- aGUAGGU------UCuaCCGCGGCCUGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 151366 0.8 0.423597
Target:  5'- ---cUCAAGAUGGCGCCGGcCGAAAAc -3'
miRNA:   3'- aguaGGUUCUACCGCGGCCuGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 151453 0.8 0.423597
Target:  5'- ---cUCAAGAUGGCGCCGGcCGAAAAc -3'
miRNA:   3'- aguaGGUUCUACCGCGGCCuGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 116159 0.78 0.527489
Target:  5'- aCAUCCccGAGccgcUGGCGCCGGGCGAGu- -3'
miRNA:   3'- aGUAGG--UUCu---ACCGCGGCCUGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 226978 0.77 0.598295
Target:  5'- -uGUCCAAGGUGGUcagggccaucgaGUCGGACGAGGAc -3'
miRNA:   3'- agUAGGUUCUACCG------------CGGCCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 102365 0.75 0.720927
Target:  5'- gUCGUCCgGAGGuccUGGaGCCGGACGAGGGg -3'
miRNA:   3'- -AGUAGG-UUCU---ACCgCGGCCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 200701 0.75 0.720927
Target:  5'- gUCGUCUcGGGUGGCGUCGGGCu---- -3'
miRNA:   3'- -AGUAGGuUCUACCGCGGCCUGcuuuu -5'
9034 5' -52.6 NC_002512.2 + 216223 0.75 0.720927
Target:  5'- cUCGUCCGGGAgcUGGaGCCGcGGCGAGAc -3'
miRNA:   3'- -AGUAGGUUCU--ACCgCGGC-CUGCUUUu -5'
9034 5' -52.6 NC_002512.2 + 49786 0.74 0.760105
Target:  5'- aCGggggCCGAGGUGGaCGCCaucgcGGACGAGAAa -3'
miRNA:   3'- aGUa---GGUUCUACC-GCGG-----CCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 209607 0.74 0.769635
Target:  5'- aCGUCCAcgAGAUGuacgaccuGCgGCCGGACGAGGAc -3'
miRNA:   3'- aGUAGGU--UCUAC--------CG-CGGCCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 145427 0.73 0.788315
Target:  5'- cUCGUCCGccgcGGUGCUGGACGAGAu -3'
miRNA:   3'- -AGUAGGUucuaCCGCGGCCUGCUUUu -5'
9034 5' -52.6 NC_002512.2 + 89158 0.73 0.815245
Target:  5'- gUC-UCCGGGAUGGagGCCGaGACGAGGu -3'
miRNA:   3'- -AGuAGGUUCUACCg-CGGC-CUGCUUUu -5'
9034 5' -52.6 NC_002512.2 + 95785 0.72 0.840661
Target:  5'- gCGUCCGAGcgguaGGCGCCGGggcGCGGAu- -3'
miRNA:   3'- aGUAGGUUCua---CCGCGGCC---UGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 22399 0.72 0.840661
Target:  5'- -gAUCCgGAGAcgGGCGCCGaGACGAGc- -3'
miRNA:   3'- agUAGG-UUCUa-CCGCGGC-CUGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 44474 0.72 0.864351
Target:  5'- --cUCCAGGGcgccccGGgGCCGGGCGGAGAa -3'
miRNA:   3'- aguAGGUUCUa-----CCgCGGCCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 43882 0.72 0.864351
Target:  5'- gCGUCCA----GGUGCCGGACGAc-- -3'
miRNA:   3'- aGUAGGUucuaCCGCGGCCUGCUuuu -5'
9034 5' -52.6 NC_002512.2 + 162164 0.71 0.886136
Target:  5'- aUCAUCCGAcGUGGcCGCCauGACGAGAu -3'
miRNA:   3'- -AGUAGGUUcUACC-GCGGc-CUGCUUUu -5'
9034 5' -52.6 NC_002512.2 + 197995 0.71 0.899531
Target:  5'- cUCGUCUucgcGAGcgGGCGaCGGACGggGg -3'
miRNA:   3'- -AGUAGG----UUCuaCCGCgGCCUGCuuUu -5'
9034 5' -52.6 NC_002512.2 + 115867 0.7 0.911987
Target:  5'- uUCG-CCGAGGcgGGCccGCCGGACGAc-- -3'
miRNA:   3'- -AGUaGGUUCUa-CCG--CGGCCUGCUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.