miRNA display CGI


Results 1 - 20 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 5' -52.6 NC_002512.2 + 148 0.68 0.975249
Target:  5'- ---gCCGGGcggGGCGCCGG-CGGAGGa -3'
miRNA:   3'- aguaGGUUCua-CCGCGGCCuGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 4857 0.66 0.991427
Target:  5'- cCAUCgCGGGGUucgccgcgugcGGCGCCGGcUGGAGGa -3'
miRNA:   3'- aGUAG-GUUCUA-----------CCGCGGCCuGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 8787 0.7 0.92887
Target:  5'- ---cCCGAGGaGGCGCCGGAgGGc-- -3'
miRNA:   3'- aguaGGUUCUaCCGCGGCCUgCUuuu -5'
9034 5' -52.6 NC_002512.2 + 9869 0.66 0.992912
Target:  5'- ---cCCGAGAcGGagcggccucucgaccCGCCGGGCGAGGGg -3'
miRNA:   3'- aguaGGUUCUaCC---------------GCGGCCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 10209 0.66 0.987265
Target:  5'- cUCGUCCucGGgcGGCGCgcccagaucccgaCGGGCGAAc- -3'
miRNA:   3'- -AGUAGGu-UCuaCCGCG-------------GCCUGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 20288 0.7 0.92887
Target:  5'- aCAUCUcguGGAcgUGGCggugaccguGCCGGACGAGGAg -3'
miRNA:   3'- aGUAGGu--UCU--ACCG---------CGGCCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 22399 0.72 0.840661
Target:  5'- -gAUCCgGAGAcgGGCGCCGaGACGAGc- -3'
miRNA:   3'- agUAGG-UUCUa-CCGCGGC-CUGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 23565 0.68 0.975249
Target:  5'- aCGUgCCAccuGGcGUGGcCGCUGGGCGAGAGc -3'
miRNA:   3'- aGUA-GGU---UC-UACC-GCGGCCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 27968 0.68 0.963372
Target:  5'- gUCG-CCGAug-GGCgGCCGGGCGAGAu -3'
miRNA:   3'- -AGUaGGUUcuaCCG-CGGCCUGCUUUu -5'
9034 5' -52.6 NC_002512.2 + 31651 0.66 0.990222
Target:  5'- cCGUCCcGGAcggcgcgGGCGCggccgugguggCGGACGggGAg -3'
miRNA:   3'- aGUAGGuUCUa------CCGCG-----------GCCUGCuuUU- -5'
9034 5' -52.6 NC_002512.2 + 32709 0.69 0.956144
Target:  5'- -gGUCCAugaggacgaAGA-GGCGCgGGugGAAGAc -3'
miRNA:   3'- agUAGGU---------UCUaCCGCGgCCugCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 36572 0.67 0.977717
Target:  5'- ---gCCGGGA-GGCGgCGGugGAGAc -3'
miRNA:   3'- aguaGGUUCUaCCGCgGCCugCUUUu -5'
9034 5' -52.6 NC_002512.2 + 40655 0.7 0.917856
Target:  5'- aCGUCCGcGAcGGCGaCGGACGGAu- -3'
miRNA:   3'- aGUAGGUuCUaCCGCgGCCUGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 43882 0.72 0.864351
Target:  5'- gCGUCCA----GGUGCCGGACGAc-- -3'
miRNA:   3'- aGUAGGUucuaCCGCGGCCUGCUuuu -5'
9034 5' -52.6 NC_002512.2 + 44474 0.72 0.864351
Target:  5'- --cUCCAGGGcgccccGGgGCCGGGCGGAGAa -3'
miRNA:   3'- aguAGGUUCUa-----CCgCGGCCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 47528 0.66 0.99251
Target:  5'- aCAUCCAcgAGAUccaGCaGCCGGGCGcgGAg -3'
miRNA:   3'- aGUAGGU--UCUAc--CG-CGGCCUGCuuUU- -5'
9034 5' -52.6 NC_002512.2 + 49786 0.74 0.760105
Target:  5'- aCGggggCCGAGGUGGaCGCCaucgcGGACGAGAAa -3'
miRNA:   3'- aGUa---GGUUCUACC-GCGG-----CCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 51624 0.66 0.990222
Target:  5'- aCAUCgAAGAcaUGGCGaCGGAccCGGAGAc -3'
miRNA:   3'- aGUAGgUUCU--ACCGCgGCCU--GCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 53373 0.69 0.943578
Target:  5'- aCggCCAAGcgGGCGCUGGaAUGGAc- -3'
miRNA:   3'- aGuaGGUUCuaCCGCGGCC-UGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 53843 0.66 0.98742
Target:  5'- ---cCCGGGGgcGGCGCCGGGaGGAGAg -3'
miRNA:   3'- aguaGGUUCUa-CCGCGGCCUgCUUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.