miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 5' -52.6 NC_002512.2 + 56546 0.68 0.969725
Target:  5'- aCGUCCAGGcgcGUGCCGGGacCGAAGAc -3'
miRNA:   3'- aGUAGGUUCuacCGCGGCCU--GCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 81174 0.69 0.948001
Target:  5'- --uUCCucuuGAUGGCGCCgacgauccGGGCGAAGg -3'
miRNA:   3'- aguAGGuu--CUACCGCGG--------CCUGCUUUu -5'
9034 5' -52.6 NC_002512.2 + 78450 0.69 0.948001
Target:  5'- aUCuugagCCAAcAUGGCGCCGGcCGGAc- -3'
miRNA:   3'- -AGua---GGUUcUACCGCGGCCuGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 32709 0.69 0.956144
Target:  5'- -gGUCCAugaggacgaAGA-GGCGCgGGugGAAGAc -3'
miRNA:   3'- agUAGGU---------UCUaCCGCGgCCugCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 128187 0.69 0.956144
Target:  5'- gUCG-CCGAGcgGGcCGCCGG-CGGGAc -3'
miRNA:   3'- -AGUaGGUUCuaCC-GCGGCCuGCUUUu -5'
9034 5' -52.6 NC_002512.2 + 78642 0.69 0.95987
Target:  5'- cCGaCCGAGAugaUGGCGUCGGuCGAGc- -3'
miRNA:   3'- aGUaGGUUCU---ACCGCGGCCuGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 27968 0.68 0.963372
Target:  5'- gUCG-CCGAug-GGCgGCCGGGCGAGAu -3'
miRNA:   3'- -AGUaGGUUcuaCCG-CGGCCUGCUUUu -5'
9034 5' -52.6 NC_002512.2 + 106627 0.68 0.963372
Target:  5'- gUCcgCCGGGGgguagcGGCGCCGGcucgGCGAGu- -3'
miRNA:   3'- -AGuaGGUUCUa-----CCGCGGCC----UGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 80000 0.68 0.966337
Target:  5'- -gGUCCAGGcagcGGCagccggaGCCGGACGAGGc -3'
miRNA:   3'- agUAGGUUCua--CCG-------CGGCCUGCUUUu -5'
9034 5' -52.6 NC_002512.2 + 53373 0.69 0.943578
Target:  5'- aCggCCAAGcgGGCGCUGGaAUGGAc- -3'
miRNA:   3'- aGuaGGUUCuaCCGCGGCC-UGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 54662 0.69 0.943578
Target:  5'- gUCA-CCAAGAUGGacCGgCGGACGGu-- -3'
miRNA:   3'- -AGUaGGUUCUACC--GCgGCCUGCUuuu -5'
9034 5' -52.6 NC_002512.2 + 8787 0.7 0.92887
Target:  5'- ---cCCGAGGaGGCGCCGGAgGGc-- -3'
miRNA:   3'- aguaGGUUCUaCCGCGGCCUgCUuuu -5'
9034 5' -52.6 NC_002512.2 + 49786 0.74 0.760105
Target:  5'- aCGggggCCGAGGUGGaCGCCaucgcGGACGAGAAa -3'
miRNA:   3'- aGUa---GGUUCUACC-GCGG-----CCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 89158 0.73 0.815245
Target:  5'- gUC-UCCGGGAUGGagGCCGaGACGAGGu -3'
miRNA:   3'- -AGuAGGUUCUACCg-CGGC-CUGCUUUu -5'
9034 5' -52.6 NC_002512.2 + 22399 0.72 0.840661
Target:  5'- -gAUCCgGAGAcgGGCGCCGaGACGAGc- -3'
miRNA:   3'- agUAGG-UUCUa-CCGCGGC-CUGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 44474 0.72 0.864351
Target:  5'- --cUCCAGGGcgccccGGgGCCGGGCGGAGAa -3'
miRNA:   3'- aguAGGUUCUa-----CCgCGGCCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 43882 0.72 0.864351
Target:  5'- gCGUCCA----GGUGCCGGACGAc-- -3'
miRNA:   3'- aGUAGGUucuaCCGCGGCCUGCUuuu -5'
9034 5' -52.6 NC_002512.2 + 162164 0.71 0.886136
Target:  5'- aUCAUCCGAcGUGGcCGCCauGACGAGAu -3'
miRNA:   3'- -AGUAGGUUcUACC-GCGGc-CUGCUUUu -5'
9034 5' -52.6 NC_002512.2 + 40655 0.7 0.917856
Target:  5'- aCGUCCGcGAcGGCGaCGGACGGAu- -3'
miRNA:   3'- aGUAGGUuCUaCCGCgGCCUGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 20288 0.7 0.92887
Target:  5'- aCAUCUcguGGAcgUGGCggugaccguGCCGGACGAGGAg -3'
miRNA:   3'- aGUAGGu--UCU--ACCG---------CGGCCUGCUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.