miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9035 3' -59.9 NC_002512.2 + 151102 1.1 0.002296
Target:  5'- aCGUGCACGUGUCUCGGGGCGCGGUGGc -3'
miRNA:   3'- -GCACGUGCACAGAGCCCCGCGCCACC- -5'
9035 3' -59.9 NC_002512.2 + 188909 0.76 0.362399
Target:  5'- gGUGCGCGcgcgGUCggagagucccgguggCGGGGCGCGGcGGu -3'
miRNA:   3'- gCACGUGCa---CAGa--------------GCCCCGCGCCaCC- -5'
9035 3' -59.9 NC_002512.2 + 92316 0.72 0.539125
Target:  5'- uGUGCuuuuCGUGUCUCGGGGCGg----- -3'
miRNA:   3'- gCACGu---GCACAGAGCCCCGCgccacc -5'
9035 3' -59.9 NC_002512.2 + 126738 0.72 0.561533
Target:  5'- gCG-GCGCGUGccUCuuggcccgagacgccUCGGGGCGCGGcGGc -3'
miRNA:   3'- -GCaCGUGCAC--AG---------------AGCCCCGCGCCaCC- -5'
9035 3' -59.9 NC_002512.2 + 131207 0.71 0.61847
Target:  5'- uCGUGCGCGgccaggcgcucgacGUCgcggUCGGaGGcCGCGGUGGc -3'
miRNA:   3'- -GCACGUGCa-------------CAG----AGCC-CC-GCGCCACC- -5'
9035 3' -59.9 NC_002512.2 + 115673 0.71 0.624203
Target:  5'- -cUGCACGUGggCUCGGGccgggccuacaGCaCGGUGGa -3'
miRNA:   3'- gcACGUGCACa-GAGCCC-----------CGcGCCACC- -5'
9035 3' -59.9 NC_002512.2 + 141664 0.7 0.633761
Target:  5'- aCGUGUACGUGgccaUCUCuc-GCGUGGUGGa -3'
miRNA:   3'- -GCACGUGCAC----AGAGcccCGCGCCACC- -5'
9035 3' -59.9 NC_002512.2 + 219031 0.7 0.643318
Target:  5'- aCGUGCugGUcuacGUCgUCGGccgcGGCGCGG-GGc -3'
miRNA:   3'- -GCACGugCA----CAG-AGCC----CCGCGCCaCC- -5'
9035 3' -59.9 NC_002512.2 + 122970 0.7 0.652867
Target:  5'- uCGUGCGgGUG-CgCGaGGGCGCcuGGUGGc -3'
miRNA:   3'- -GCACGUgCACaGaGC-CCCGCG--CCACC- -5'
9035 3' -59.9 NC_002512.2 + 29887 0.7 0.6814
Target:  5'- gGUGCACGUGggccgCUCGuccccgccGGGCGCGc-GGa -3'
miRNA:   3'- gCACGUGCACa----GAGC--------CCCGCGCcaCC- -5'
9035 3' -59.9 NC_002512.2 + 221367 0.69 0.700257
Target:  5'- cCGUGuCGguggUGUGUCcucuccucgggCGGGGCGCGGgcgGGg -3'
miRNA:   3'- -GCAC-GU----GCACAGa----------GCCCCGCGCCa--CC- -5'
9035 3' -59.9 NC_002512.2 + 93629 0.69 0.718914
Target:  5'- aCGgGCGCGUG-CUCGGuGGCGuuGUGu -3'
miRNA:   3'- -GCaCGUGCACaGAGCC-CCGCgcCACc -5'
9035 3' -59.9 NC_002512.2 + 87348 0.69 0.737312
Target:  5'- gGUGCGCG-GUCgaCGGGGCGaacuguaccGUGGa -3'
miRNA:   3'- gCACGUGCaCAGa-GCCCCGCgc-------CACC- -5'
9035 3' -59.9 NC_002512.2 + 228708 0.68 0.746395
Target:  5'- uCGUGCucCGUGUCgCGGGGgaagacgugaUGCGGgguagGGg -3'
miRNA:   3'- -GCACGu-GCACAGaGCCCC----------GCGCCa----CC- -5'
9035 3' -59.9 NC_002512.2 + 90097 0.68 0.753599
Target:  5'- cCGUGUGCGUGUaugucuucuggaUCGcGGGCGCccGGUGc -3'
miRNA:   3'- -GCACGUGCACAg-----------AGC-CCCGCG--CCACc -5'
9035 3' -59.9 NC_002512.2 + 102938 0.68 0.75539
Target:  5'- --aGCGCcagaggGUCgacCGGGGCGCGGgcgGGu -3'
miRNA:   3'- gcaCGUGca----CAGa--GCCCCGCGCCa--CC- -5'
9035 3' -59.9 NC_002512.2 + 22575 0.68 0.781778
Target:  5'- gGUGCugGUGaacggCUCGGaGGCcaCGGUGc -3'
miRNA:   3'- gCACGugCACa----GAGCC-CCGc-GCCACc -5'
9035 3' -59.9 NC_002512.2 + 79032 0.67 0.822525
Target:  5'- aGUGgGCGUGgcuucggaacccaUCUCGGGgaaGCGCGGcgcGGu -3'
miRNA:   3'- gCACgUGCAC-------------AGAGCCC---CGCGCCa--CC- -5'
9035 3' -59.9 NC_002512.2 + 119409 0.67 0.831202
Target:  5'- gCGUGC-CGcUG-CUCGGGaGCGUGGaccgcgGGg -3'
miRNA:   3'- -GCACGuGC-ACaGAGCCC-CGCGCCa-----CC- -5'
9035 3' -59.9 NC_002512.2 + 114767 0.67 0.838925
Target:  5'- gGUGCGCGgGUCgcgaCGGGGCaCGGc-- -3'
miRNA:   3'- gCACGUGCaCAGa---GCCCCGcGCCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.