Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 5891 | 0.66 | 0.881628 |
Target: 5'- uCGUcGCuCGUGgacggCGGGGCGCGcGgGGg -3' miRNA: 3'- -GCA-CGuGCACaga--GCCCCGCGC-CaCC- -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 22575 | 0.68 | 0.781778 |
Target: 5'- gGUGCugGUGaacggCUCGGaGGCcaCGGUGc -3' miRNA: 3'- gCACGugCACa----GAGCC-CCGc-GCCACc -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 29887 | 0.7 | 0.6814 |
Target: 5'- gGUGCACGUGggccgCUCGuccccgccGGGCGCGc-GGa -3' miRNA: 3'- gCACGUGCACa----GAGC--------CCCGCGCcaCC- -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 43076 | 0.66 | 0.861087 |
Target: 5'- --gGCAcCG-GUCcCGGGGCGCGGcGa -3' miRNA: 3'- gcaCGU-GCaCAGaGCCCCGCGCCaCc -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 79032 | 0.67 | 0.822525 |
Target: 5'- aGUGgGCGUGgcuucggaacccaUCUCGGGgaaGCGCGGcgcGGu -3' miRNA: 3'- gCACgUGCAC-------------AGAGCCC---CGCGCCa--CC- -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 82353 | 0.66 | 0.86812 |
Target: 5'- gGUGgGCGUG-Cg-GGGGCGgCGGaGGg -3' miRNA: 3'- gCACgUGCACaGagCCCCGC-GCCaCC- -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 87348 | 0.69 | 0.737312 |
Target: 5'- gGUGCGCG-GUCgaCGGGGCGaacuguaccGUGGa -3' miRNA: 3'- gCACGUGCaCAGa-GCCCCGCgc-------CACC- -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 90097 | 0.68 | 0.753599 |
Target: 5'- cCGUGUGCGUGUaugucuucuggaUCGcGGGCGCccGGUGc -3' miRNA: 3'- -GCACGUGCACAg-----------AGC-CCCGCG--CCACc -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 90934 | 0.66 | 0.86812 |
Target: 5'- aCGgGCGCGa--C-CGGGGCGUGcGUGGg -3' miRNA: 3'- -GCaCGUGCacaGaGCCCCGCGC-CACC- -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 91584 | 0.66 | 0.846484 |
Target: 5'- uCGgGCGCGUGUUUCGGGaG-GaaGUGGa -3' miRNA: 3'- -GCaCGUGCACAGAGCCC-CgCgcCACC- -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 92316 | 0.72 | 0.539125 |
Target: 5'- uGUGCuuuuCGUGUCUCGGGGCGg----- -3' miRNA: 3'- gCACGu---GCACAGAGCCCCGCgccacc -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 93629 | 0.69 | 0.718914 |
Target: 5'- aCGgGCGCGUG-CUCGGuGGCGuuGUGu -3' miRNA: 3'- -GCaCGUGCACaGAGCC-CCGCgcCACc -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 102938 | 0.68 | 0.75539 |
Target: 5'- --aGCGCcagaggGUCgacCGGGGCGCGGgcgGGu -3' miRNA: 3'- gcaCGUGca----CAGa--GCCCCGCGCCa--CC- -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 104782 | 0.66 | 0.853873 |
Target: 5'- aCG-GCGCGUGg--CGGGGUccgcgcGCGGcGGg -3' miRNA: 3'- -GCaCGUGCACagaGCCCCG------CGCCaCC- -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 114767 | 0.67 | 0.838925 |
Target: 5'- gGUGCGCGgGUCgcgaCGGGGCaCGGc-- -3' miRNA: 3'- gCACGUGCaCAGa---GCCCCGcGCCacc -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 115673 | 0.71 | 0.624203 |
Target: 5'- -cUGCACGUGggCUCGGGccgggccuacaGCaCGGUGGa -3' miRNA: 3'- gcACGUGCACa-GAGCCC-----------CGcGCCACC- -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 119409 | 0.67 | 0.831202 |
Target: 5'- gCGUGC-CGcUG-CUCGGGaGCGUGGaccgcgGGg -3' miRNA: 3'- -GCACGuGC-ACaGAGCCC-CGCGCCa-----CC- -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 122970 | 0.7 | 0.652867 |
Target: 5'- uCGUGCGgGUG-CgCGaGGGCGCcuGGUGGc -3' miRNA: 3'- -GCACGUgCACaGaGC-CCCGCG--CCACC- -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 126738 | 0.72 | 0.561533 |
Target: 5'- gCG-GCGCGUGccUCuuggcccgagacgccUCGGGGCGCGGcGGc -3' miRNA: 3'- -GCaCGUGCAC--AG---------------AGCCCCGCGCCaCC- -5' |
|||||||
9035 | 3' | -59.9 | NC_002512.2 | + | 131207 | 0.71 | 0.61847 |
Target: 5'- uCGUGCGCGgccaggcgcucgacGUCgcggUCGGaGGcCGCGGUGGc -3' miRNA: 3'- -GCACGUGCa-------------CAG----AGCC-CC-GCGCCACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home