miRNA display CGI

Results 21 - 30 of 30 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
9035	3'	-59.9	NC_002512.2	+	141664	0.7	0.633761
	Target:  5'- aCGUGUACGUGgccaUCUCuc-GCGUGGUGGa -3' miRNA:   3'- -GCACGUGCAC----AGAGcccCGCGCCACC- -5'
9035	3'	-59.9	NC_002512.2	+	151102	1.1	0.002296
	Target:  5'- aCGUGCACGUGUCUCGGGGCGCGGUGGc -3' miRNA:   3'- -GCACGUGCACAGAGCCCCGCGCCACC- -5'
9035	3'	-59.9	NC_002512.2	+	154893	0.66	0.881628
	Target:  5'- --cGCGCGUGUg-CGGGGaggguGCuuGGUGGg -3' miRNA:   3'- gcaCGUGCACAgaGCCCCg----CG--CCACC- -5'
9035	3'	-59.9	NC_002512.2	+	188909	0.76	0.362399
	Target:  5'- gGUGCGCGcgcgGUCggagagucccgguggCGGGGCGCGGcGGu -3' miRNA:   3'- gCACGUGCa---CAGa--------------GCCCCGCGCCaCC- -5'
9035	3'	-59.9	NC_002512.2	+	191028	0.66	0.861087
	Target:  5'- gGUGCcuGCGaGg--CGGGGCGCGGcgcacgUGGa -3' miRNA:   3'- gCACG--UGCaCagaGCCCCGCGCC------ACC- -5'
9035	3'	-59.9	NC_002512.2	+	210261	0.66	0.853873
	Target:  5'- gCGUGCGCcgg-CUCGGGGgaGagggaGGUGGg -3' miRNA:   3'- -GCACGUGcacaGAGCCCCg-Cg----CCACC- -5'
9035	3'	-59.9	NC_002512.2	+	219031	0.7	0.643318
	Target:  5'- aCGUGCugGUcuacGUCgUCGGccgcGGCGCGG-GGc -3' miRNA:   3'- -GCACGugCA----CAG-AGCC----CCGCGCCaCC- -5'
9035	3'	-59.9	NC_002512.2	+	221367	0.69	0.700257
	Target:  5'- cCGUGuCGguggUGUGUCcucuccucgggCGGGGCGCGGgcgGGg -3' miRNA:   3'- -GCAC-GU----GCACAGa----------GCCCCGCGCCa--CC- -5'
9035	3'	-59.9	NC_002512.2	+	228388	0.66	0.846484
	Target:  5'- gGUGUccgGCGUGaUCUguccgggggaCGGGGCGCuGGgGGg -3' miRNA:   3'- gCACG---UGCAC-AGA----------GCCCCGCG-CCaCC- -5'
9035	3'	-59.9	NC_002512.2	+	228708	0.68	0.746395
	Target:  5'- uCGUGCucCGUGUCgCGGGGgaagacgugaUGCGGgguagGGg -3' miRNA:   3'- -GCACGu-GCACAGaGCCCC----------GCGCCa----CC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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