miRNA display CGI

Results 21 - 30 of 30 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
9035	3'	-59.9	NC_002512.2	+	29887	0.7	0.6814
	Target:  5'- gGUGCACGUGggccgCUCGuccccgccGGGCGCGc-GGa -3' miRNA:   3'- gCACGUGCACa----GAGC--------CCCGCGCcaCC- -5'
9035	3'	-59.9	NC_002512.2	+	122970	0.7	0.652867
	Target:  5'- uCGUGCGgGUG-CgCGaGGGCGCcuGGUGGc -3' miRNA:   3'- -GCACGUgCACaGaGC-CCCGCG--CCACC- -5'
9035	3'	-59.9	NC_002512.2	+	219031	0.7	0.643318
	Target:  5'- aCGUGCugGUcuacGUCgUCGGccgcGGCGCGG-GGc -3' miRNA:   3'- -GCACGugCA----CAG-AGCC----CCGCGCCaCC- -5'
9035	3'	-59.9	NC_002512.2	+	141664	0.7	0.633761
	Target:  5'- aCGUGUACGUGgccaUCUCuc-GCGUGGUGGa -3' miRNA:   3'- -GCACGUGCAC----AGAGcccCGCGCCACC- -5'
9035	3'	-59.9	NC_002512.2	+	115673	0.71	0.624203
	Target:  5'- -cUGCACGUGggCUCGGGccgggccuacaGCaCGGUGGa -3' miRNA:   3'- gcACGUGCACa-GAGCCC-----------CGcGCCACC- -5'
9035	3'	-59.9	NC_002512.2	+	131207	0.71	0.61847
	Target:  5'- uCGUGCGCGgccaggcgcucgacGUCgcggUCGGaGGcCGCGGUGGc -3' miRNA:   3'- -GCACGUGCa-------------CAG----AGCC-CC-GCGCCACC- -5'
9035	3'	-59.9	NC_002512.2	+	126738	0.72	0.561533
	Target:  5'- gCG-GCGCGUGccUCuuggcccgagacgccUCGGGGCGCGGcGGc -3' miRNA:   3'- -GCaCGUGCAC--AG---------------AGCCCCGCGCCaCC- -5'
9035	3'	-59.9	NC_002512.2	+	92316	0.72	0.539125
	Target:  5'- uGUGCuuuuCGUGUCUCGGGGCGg----- -3' miRNA:   3'- gCACGu---GCACAGAGCCCCGCgccacc -5'
9035	3'	-59.9	NC_002512.2	+	188909	0.76	0.362399
	Target:  5'- gGUGCGCGcgcgGUCggagagucccgguggCGGGGCGCGGcGGu -3' miRNA:   3'- gCACGUGCa---CAGa--------------GCCCCGCGCCaCC- -5'
9035	3'	-59.9	NC_002512.2	+	151102	1.1	0.002296
	Target:  5'- aCGUGCACGUGUCUCGGGGCGCGGUGGc -3' miRNA:   3'- -GCACGUGCACAGAGCCCCGCGCCACC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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