Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 9035 | 5' | -56.4 | NC_002512.2 | + | 83394 | 0.68 | 0.916385 |
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Target: 5'- cCCg--CGCGUCCCcgCCGUGGggguuucCGUGGu -3' miRNA: 3'- aGGauaGUGCGGGGa-GGCACU-------GCACC- -5' |
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| 9035 | 5' | -56.4 | NC_002512.2 | + | 82488 | 0.66 | 0.964392 |
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Target: 5'- gCCguuUgACGCCgguCCUCUGcaUGGCGUGGu -3' miRNA: 3'- aGGau-AgUGCGG---GGAGGC--ACUGCACC- -5' |
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| 9035 | 5' | -56.4 | NC_002512.2 | + | 68385 | 0.67 | 0.932466 |
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Target: 5'- gUCCgcgcaGCGCaccaggUCCUCCuUGACGUGGg -3' miRNA: 3'- -AGGauag-UGCG------GGGAGGcACUGCACC- -5' |
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| 9035 | 5' | -56.4 | NC_002512.2 | + | 60259 | 0.66 | 0.961129 |
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Target: 5'- aCCUAUCAgGCCCCUCUcauauagGACu--- -3' miRNA: 3'- aGGAUAGUgCGGGGAGGca-----CUGcacc -5' |
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| 9035 | 5' | -56.4 | NC_002512.2 | + | 47713 | 0.66 | 0.951695 |
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Target: 5'- aUCCUG-CGCGCCgCCUCgCGggagGAgggcucggaacagauCGUGGa -3' miRNA: 3'- -AGGAUaGUGCGG-GGAG-GCa---CU---------------GCACC- -5' |
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| 9035 | 5' | -56.4 | NC_002512.2 | + | 44663 | 0.71 | 0.749628 |
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Target: 5'- aUUUAcUUACGCCC--CCGUGACGUGGa -3' miRNA: 3'- aGGAU-AGUGCGGGgaGGCACUGCACC- -5' |
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| 9035 | 5' | -56.4 | NC_002512.2 | + | 44585 | 0.74 | 0.604934 |
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Target: 5'- cUCC--UCGCGCCCCUCCaG-GACGuUGGc -3' miRNA: 3'- -AGGauAGUGCGGGGAGG-CaCUGC-ACC- -5' |
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| 9035 | 5' | -56.4 | NC_002512.2 | + | 24790 | 0.68 | 0.899446 |
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Target: 5'- gUCCgggCGCGCCCC-CCGagGACGg-- -3' miRNA: 3'- -AGGauaGUGCGGGGaGGCa-CUGCacc -5' |
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| 9035 | 5' | -56.4 | NC_002512.2 | + | 10076 | 0.71 | 0.794452 |
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Target: 5'- cCCUGUCGCGCCCCgcgcguccccuaUCUGUGucccCGgccGGg -3' miRNA: 3'- aGGAUAGUGCGGGG------------AGGCACu---GCa--CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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