miRNA display CGI


Results 21 - 40 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 5' -58.2 NC_002512.2 + 174703 0.66 0.918928
Target:  5'- gUUGGCCGC-GugGAUGCcgUAGGUCaUGGg -3'
miRNA:   3'- -AGCCGGCGcCugCUGCG--AUUCAG-GCU- -5'
9036 5' -58.2 NC_002512.2 + 146969 0.66 0.918928
Target:  5'- gCGGCCGCGGcCGAgacuucCGCUGccugaccaCCGAg -3'
miRNA:   3'- aGCCGGCGCCuGCU------GCGAUuca-----GGCU- -5'
9036 5' -58.2 NC_002512.2 + 133459 0.66 0.918928
Target:  5'- gCGGUauuuaaaccgGCGGgaGCGAgGCUcGGUCCGAg -3'
miRNA:   3'- aGCCGg---------CGCC--UGCUgCGAuUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 159386 0.66 0.918928
Target:  5'- gCGGgucCCGCGGcgucGgGGCGgaAGGUCCGGu -3'
miRNA:   3'- aGCC---GGCGCC----UgCUGCgaUUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 189202 0.66 0.918928
Target:  5'- gUC-GCCGCGGGCGGCauGCUcGAcGUCgGAu -3'
miRNA:   3'- -AGcCGGCGCCUGCUG--CGA-UU-CAGgCU- -5'
9036 5' -58.2 NC_002512.2 + 156337 0.66 0.918928
Target:  5'- gCGGCUGCGGGaccugcaGAUGCaccuGUCCa- -3'
miRNA:   3'- aGCCGGCGCCUg------CUGCGauu-CAGGcu -5'
9036 5' -58.2 NC_002512.2 + 29972 0.66 0.918928
Target:  5'- cCGGCCGCgaacGGACGACagacacggGC--GGUCuCGAg -3'
miRNA:   3'- aGCCGGCG----CCUGCUG--------CGauUCAG-GCU- -5'
9036 5' -58.2 NC_002512.2 + 57041 0.66 0.918928
Target:  5'- -aGGCCGCGucCGACGaccgGGGggcgCCGGg -3'
miRNA:   3'- agCCGGCGCcuGCUGCga--UUCa---GGCU- -5'
9036 5' -58.2 NC_002512.2 + 94763 0.66 0.918928
Target:  5'- cCGGCCcuCGGAgCGuCGCgccGUCCGGa -3'
miRNA:   3'- aGCCGGc-GCCU-GCuGCGauuCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 15476 0.66 0.918928
Target:  5'- cUCGGgCGCGG-CG-CGCUccGGcCCGAa -3'
miRNA:   3'- -AGCCgGCGCCuGCuGCGAu-UCaGGCU- -5'
9036 5' -58.2 NC_002512.2 + 74939 0.66 0.91839
Target:  5'- gCGGaCCGCGGgagaGCGACGggAcgagagcGGUCCGc -3'
miRNA:   3'- aGCC-GGCGCC----UGCUGCgaU-------UCAGGCu -5'
9036 5' -58.2 NC_002512.2 + 111306 0.66 0.917307
Target:  5'- -gGGCCGCcGAucgcggcucccuuuCGACGCUcccGAcGUCCGAc -3'
miRNA:   3'- agCCGGCGcCU--------------GCUGCGA---UU-CAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 31648 0.66 0.913448
Target:  5'- -aGGCCGUcccGGACGGCGCgggcgcGG-CCGu -3'
miRNA:   3'- agCCGGCG---CCUGCUGCGau----UCaGGCu -5'
9036 5' -58.2 NC_002512.2 + 83970 0.66 0.913448
Target:  5'- cCGGCgGCGGAugccCGGCGCggggcGGUCgCGc -3'
miRNA:   3'- aGCCGgCGCCU----GCUGCGau---UCAG-GCu -5'
9036 5' -58.2 NC_002512.2 + 222392 0.66 0.913448
Target:  5'- aCGGUgGCGGugGcCG---GGUCCGGa -3'
miRNA:   3'- aGCCGgCGCCugCuGCgauUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 207443 0.66 0.913448
Target:  5'- cUGGCCguaguagcccaGCGGAUGGgGUUGcgcGUCCGAg -3'
miRNA:   3'- aGCCGG-----------CGCCUGCUgCGAUu--CAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 183532 0.66 0.913448
Target:  5'- cUGGCUGCGGAcCGGCGUcaaccGUCUGc -3'
miRNA:   3'- aGCCGGCGCCU-GCUGCGauu--CAGGCu -5'
9036 5' -58.2 NC_002512.2 + 121467 0.66 0.913448
Target:  5'- cCGGCCcCGGGCGGCGCaga---CGAg -3'
miRNA:   3'- aGCCGGcGCCUGCUGCGauucagGCU- -5'
9036 5' -58.2 NC_002512.2 + 126405 0.66 0.913448
Target:  5'- gCGGuCCGCGGcCGcCGCcGAGacCCGAg -3'
miRNA:   3'- aGCC-GGCGCCuGCuGCGaUUCa-GGCU- -5'
9036 5' -58.2 NC_002512.2 + 13691 0.66 0.913448
Target:  5'- aCGGCCGCGGcggugaucACGgGCGCgauc-CCGAg -3'
miRNA:   3'- aGCCGGCGCC--------UGC-UGCGauucaGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.