miRNA display CGI


Results 21 - 40 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 5' -58.2 NC_002512.2 + 207183 0.74 0.516757
Target:  5'- aUGuGCCGCcgGGGCGACGCguuGGUCUGGa -3'
miRNA:   3'- aGC-CGGCG--CCUGCUGCGau-UCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 10587 0.74 0.52606
Target:  5'- gUGGCCGCGGACGACGaagcGGG-CCa- -3'
miRNA:   3'- aGCCGGCGCCUGCUGCga--UUCaGGcu -5'
9036 5' -58.2 NC_002512.2 + 4174 0.74 0.52606
Target:  5'- gCGGCuCGCGGGCGACacaucCUGAGgacgCCGGa -3'
miRNA:   3'- aGCCG-GCGCCUGCUGc----GAUUCa---GGCU- -5'
9036 5' -58.2 NC_002512.2 + 106744 0.74 0.535425
Target:  5'- cUCGGCCcCGG-CGGCGCUccgcGUCCGGc -3'
miRNA:   3'- -AGCCGGcGCCuGCUGCGAuu--CAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 16203 0.74 0.535425
Target:  5'- -aGGaCCGCGGGCGACGCcGGGcUCCc- -3'
miRNA:   3'- agCC-GGCGCCUGCUGCGaUUC-AGGcu -5'
9036 5' -58.2 NC_002512.2 + 75159 0.73 0.544847
Target:  5'- gCGGCCGCGGACGcaACGCcgu-UCCGu -3'
miRNA:   3'- aGCCGGCGCCUGC--UGCGauucAGGCu -5'
9036 5' -58.2 NC_002512.2 + 121356 0.73 0.544847
Target:  5'- -gGGCCGuUGGACGGCGgaGAGggCCGGa -3'
miRNA:   3'- agCCGGC-GCCUGCUGCgaUUCa-GGCU- -5'
9036 5' -58.2 NC_002512.2 + 16900 0.73 0.544847
Target:  5'- aCGGCCGCGG-CGACGaugAGGUCgcaGAu -3'
miRNA:   3'- aGCCGGCGCCuGCUGCga-UUCAGg--CU- -5'
9036 5' -58.2 NC_002512.2 + 201121 0.73 0.554323
Target:  5'- -aGGUCGCGGugG-CGCUccAGGUCCa- -3'
miRNA:   3'- agCCGGCGCCugCuGCGA--UUCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 111706 0.73 0.563847
Target:  5'- -gGGUCGCGGAUGACGacgGAGucUCCGGc -3'
miRNA:   3'- agCCGGCGCCUGCUGCga-UUC--AGGCU- -5'
9036 5' -58.2 NC_002512.2 + 137967 0.73 0.563847
Target:  5'- gUCGGCCGCcGACGGCGCgccg-CCGc -3'
miRNA:   3'- -AGCCGGCGcCUGCUGCGauucaGGCu -5'
9036 5' -58.2 NC_002512.2 + 37649 0.73 0.563847
Target:  5'- aUCGGCggaacaucucuCGCGGGCGACGUcgAAGaggCCGAa -3'
miRNA:   3'- -AGCCG-----------GCGCCUGCUGCGa-UUCa--GGCU- -5'
9036 5' -58.2 NC_002512.2 + 218222 0.73 0.573414
Target:  5'- -gGGCCGCGGcgggccGCGGCGCcgauauauGUCCGGg -3'
miRNA:   3'- agCCGGCGCC------UGCUGCGauu-----CAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 171777 0.73 0.573414
Target:  5'- cUCGGUCGCGGAgGugGCUcaccucGUcCCGAc -3'
miRNA:   3'- -AGCCGGCGCCUgCugCGAuu----CA-GGCU- -5'
9036 5' -58.2 NC_002512.2 + 2053 0.73 0.583018
Target:  5'- aUCGGCUGCGGcgccaGCGggaGCGCgGAGUCCa- -3'
miRNA:   3'- -AGCCGGCGCC-----UGC---UGCGaUUCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 184584 0.73 0.583018
Target:  5'- -gGGCCGgcaGGGCGGCGgUccGUCCGAc -3'
miRNA:   3'- agCCGGCg--CCUGCUGCgAuuCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 106771 0.73 0.592654
Target:  5'- aCGGCCGCcGACGGCGCgggacGGuUCCGc -3'
miRNA:   3'- aGCCGGCGcCUGCUGCGau---UC-AGGCu -5'
9036 5' -58.2 NC_002512.2 + 222189 0.73 0.592654
Target:  5'- -gGGCCGCGGcCGGCGUc--GUCCGu -3'
miRNA:   3'- agCCGGCGCCuGCUGCGauuCAGGCu -5'
9036 5' -58.2 NC_002512.2 + 3318 0.72 0.602316
Target:  5'- cUGGCCGgGGA--GCGCgagccgGAGUCCGAc -3'
miRNA:   3'- aGCCGGCgCCUgcUGCGa-----UUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 87284 0.72 0.602316
Target:  5'- gCGGUCGUggGGugGACG--GAGUCCGAg -3'
miRNA:   3'- aGCCGGCG--CCugCUGCgaUUCAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.