miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 5' -58.2 NC_002512.2 + 150909 1.09 0.003342
Target:  5'- cUCGGCCGCGGACGACGCUAAGUCCGAg -3'
miRNA:   3'- -AGCCGGCGCCUGCUGCGAUUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 14973 0.85 0.12579
Target:  5'- gCGGCCGCGGugGACGCgcagaAAGUCCc- -3'
miRNA:   3'- aGCCGGCGCCugCUGCGa----UUCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 14788 0.8 0.256664
Target:  5'- gUCGGCCGCGG-CGGCGacgAAGUCCu- -3'
miRNA:   3'- -AGCCGGCGCCuGCUGCga-UUCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 214951 0.79 0.268513
Target:  5'- gUGGCCGCGGACGcACG--GGGUCCGGa -3'
miRNA:   3'- aGCCGGCGCCUGC-UGCgaUUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 15644 0.79 0.268513
Target:  5'- cUCGGCCGCGGGCGGCGag----CCGAc -3'
miRNA:   3'- -AGCCGGCGCCUGCUGCgauucaGGCU- -5'
9036 5' -58.2 NC_002512.2 + 92550 0.79 0.280798
Target:  5'- gCGGCCGCGGcgACGACGUcgGAGgcgCCGAc -3'
miRNA:   3'- aGCCGGCGCC--UGCUGCGa-UUCa--GGCU- -5'
9036 5' -58.2 NC_002512.2 + 79977 0.77 0.379266
Target:  5'- gUCGGCCGaGGAgGGCGCgcggAGGUCCa- -3'
miRNA:   3'- -AGCCGGCgCCUgCUGCGa---UUCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 158311 0.77 0.379266
Target:  5'- -aGGCCGCGGucgucCGGCGC-GAGUCCGc -3'
miRNA:   3'- agCCGGCGCCu----GCUGCGaUUCAGGCu -5'
9036 5' -58.2 NC_002512.2 + 226726 0.76 0.395096
Target:  5'- -aGGCCGCGGGCGACGaCggcGGGaCCGGg -3'
miRNA:   3'- agCCGGCGCCUGCUGC-Ga--UUCaGGCU- -5'
9036 5' -58.2 NC_002512.2 + 72388 0.76 0.411346
Target:  5'- cUGGUCGCGGugGACGCUGAucGUUCu- -3'
miRNA:   3'- aGCCGGCGCCugCUGCGAUU--CAGGcu -5'
9036 5' -58.2 NC_002512.2 + 7771 0.75 0.436481
Target:  5'- gUCGGCCGCGGA-GAUGgUGggaucgaggaAGUCCGGg -3'
miRNA:   3'- -AGCCGGCGCCUgCUGCgAU----------UCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 135612 0.75 0.436481
Target:  5'- cCGGCCGUGGACGccaGCgaguucucggGGGUCCGGg -3'
miRNA:   3'- aGCCGGCGCCUGCug-CGa---------UUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 212583 0.75 0.436481
Target:  5'- aCGGCgGC-GACGACGCgauGUCCGGa -3'
miRNA:   3'- aGCCGgCGcCUGCUGCGauuCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 163675 0.75 0.471323
Target:  5'- cUGGCCGgGGACGuccuCGCccuGUCCGAa -3'
miRNA:   3'- aGCCGGCgCCUGCu---GCGauuCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 80639 0.75 0.480253
Target:  5'- cCGGCCguccGCGGcgGCGGCGCcGGGUCCGu -3'
miRNA:   3'- aGCCGG----CGCC--UGCUGCGaUUCAGGCu -5'
9036 5' -58.2 NC_002512.2 + 138056 0.74 0.489266
Target:  5'- cUGGUCGaCGGACGGCGUcAGGUCCu- -3'
miRNA:   3'- aGCCGGC-GCCUGCUGCGaUUCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 29232 0.74 0.489266
Target:  5'- cCGGCCGCGGGuCG-CGC--AGUCCGu -3'
miRNA:   3'- aGCCGGCGCCU-GCuGCGauUCAGGCu -5'
9036 5' -58.2 NC_002512.2 + 137318 0.74 0.498356
Target:  5'- cCGGCCGCGGcguCGGCGCc---UCCGAc -3'
miRNA:   3'- aGCCGGCGCCu--GCUGCGauucAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 45434 0.74 0.507521
Target:  5'- cCGGCCGCGG-CGACuCccuGUCCGAc -3'
miRNA:   3'- aGCCGGCGCCuGCUGcGauuCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 142279 0.74 0.507521
Target:  5'- -gGGCCGgGGACGGCGUcgacggGGGaUCCGAc -3'
miRNA:   3'- agCCGGCgCCUGCUGCGa-----UUC-AGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.