miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 5' -58.2 NC_002512.2 + 67 0.67 0.895737
Target:  5'- gUCGGUCGCGGGCG-CGagGAGg-CGAg -3'
miRNA:   3'- -AGCCGGCGCCUGCuGCgaUUCagGCU- -5'
9036 5' -58.2 NC_002512.2 + 1844 0.67 0.876168
Target:  5'- cCGuCCGCGGGCGucuCGCcgccGUCCGGu -3'
miRNA:   3'- aGCcGGCGCCUGCu--GCGauu-CAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 2053 0.73 0.583018
Target:  5'- aUCGGCUGCGGcgccaGCGggaGCGCgGAGUCCa- -3'
miRNA:   3'- -AGCCGGCGCC-----UGC---UGCGaUUCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 2118 0.7 0.717887
Target:  5'- cUCGGUCGCGGGCGucgaGCGUUcGGUCg-- -3'
miRNA:   3'- -AGCCGGCGCCUGC----UGCGAuUCAGgcu -5'
9036 5' -58.2 NC_002512.2 + 2291 0.66 0.907755
Target:  5'- cCGGCCGCugcgGGugGcggggcucugcuGCGCcggcGGUCCGGa -3'
miRNA:   3'- aGCCGGCG----CCugC------------UGCGau--UCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 2807 0.68 0.854838
Target:  5'- gCGGCCgGCGGGaccCGGCGCgggcgcGGGcCCGGa -3'
miRNA:   3'- aGCCGG-CGCCU---GCUGCGa-----UUCaGGCU- -5'
9036 5' -58.2 NC_002512.2 + 3195 0.71 0.67014
Target:  5'- aCGccGCCGCGGGCGacggcccgGCGCUcagaGAGUCUGGa -3'
miRNA:   3'- aGC--CGGCGCCUGC--------UGCGA----UUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 3318 0.72 0.602316
Target:  5'- cUGGCCGgGGA--GCGCgagccgGAGUCCGAc -3'
miRNA:   3'- aGCCGGCgCCUgcUGCGa-----UUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 3646 0.71 0.698932
Target:  5'- gCGGCCGCGGugG-CGaUAAGaucgcUCCGGc -3'
miRNA:   3'- aGCCGGCGCCugCuGCgAUUC-----AGGCU- -5'
9036 5' -58.2 NC_002512.2 + 3691 0.67 0.894489
Target:  5'- cCGGCCGCGcGcuaACGGCGCggccgucucuGUCCu- -3'
miRNA:   3'- aGCCGGCGC-C---UGCUGCGauu-------CAGGcu -5'
9036 5' -58.2 NC_002512.2 + 4174 0.74 0.52606
Target:  5'- gCGGCuCGCGGGCGACacaucCUGAGgacgCCGGa -3'
miRNA:   3'- aGCCG-GCGCCUGCUGc----GAUUCa---GGCU- -5'
9036 5' -58.2 NC_002512.2 + 4220 0.69 0.790441
Target:  5'- gCGGCCGCGGGgagcggGACGUcGAGccCCGAc -3'
miRNA:   3'- aGCCGGCGCCUg-----CUGCGaUUCa-GGCU- -5'
9036 5' -58.2 NC_002512.2 + 4606 0.67 0.882892
Target:  5'- -gGGCCGCGaGACGgACGCcGAGgacgCCc- -3'
miRNA:   3'- agCCGGCGC-CUGC-UGCGaUUCa---GGcu -5'
9036 5' -58.2 NC_002512.2 + 5261 0.69 0.763983
Target:  5'- -aGGCCGCGG-CGGCGaccccGAGcCCGGu -3'
miRNA:   3'- agCCGGCGCCuGCUGCga---UUCaGGCU- -5'
9036 5' -58.2 NC_002512.2 + 6360 0.67 0.895737
Target:  5'- -gGGCCGCGGGCG-CGUgccGUUCu- -3'
miRNA:   3'- agCCGGCGCCUGCuGCGauuCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 6410 0.7 0.736578
Target:  5'- -aGGCgGCGG-CGGCGCUGGGgaaggcggCCGu -3'
miRNA:   3'- agCCGgCGCCuGCUGCGAUUCa-------GGCu -5'
9036 5' -58.2 NC_002512.2 + 6673 0.66 0.924194
Target:  5'- cCGGCCG-GGACG-CGCUccGGGacgCCGu -3'
miRNA:   3'- aGCCGGCgCCUGCuGCGA--UUCa--GGCu -5'
9036 5' -58.2 NC_002512.2 + 7444 0.7 0.707491
Target:  5'- gUUGGCCGCGGcccgggggaagccGCGGCGCggcugCCGGc -3'
miRNA:   3'- -AGCCGGCGCC-------------UGCUGCGauucaGGCU- -5'
9036 5' -58.2 NC_002512.2 + 7771 0.75 0.436481
Target:  5'- gUCGGCCGCGGA-GAUGgUGggaucgaggaAGUCCGGg -3'
miRNA:   3'- -AGCCGGCGCCUgCUGCgAU----------UCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 8432 0.69 0.788711
Target:  5'- gCGGCCGguCGGACGAcCGCgccccggccgcGGUCCGc -3'
miRNA:   3'- aGCCGGC--GCCUGCU-GCGau---------UCAGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.