Results 1 - 20 of 291 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9036 | 5' | -58.2 | NC_002512.2 | + | 87284 | 0.72 | 0.602316 |
Target: 5'- gCGGUCGUggGGugGACG--GAGUCCGAg -3' miRNA: 3'- aGCCGGCG--CCugCUGCgaUUCAGGCU- -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 4174 | 0.74 | 0.52606 |
Target: 5'- gCGGCuCGCGGGCGACacaucCUGAGgacgCCGGa -3' miRNA: 3'- aGCCG-GCGCCUGCUGc----GAUUCa---GGCU- -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 10587 | 0.74 | 0.52606 |
Target: 5'- gUGGCCGCGGACGACGaagcGGG-CCa- -3' miRNA: 3'- aGCCGGCGCCUGCUGCga--UUCaGGcu -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 16203 | 0.74 | 0.535425 |
Target: 5'- -aGGaCCGCGGGCGACGCcGGGcUCCc- -3' miRNA: 3'- agCC-GGCGCCUGCUGCGaUUC-AGGcu -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 106744 | 0.74 | 0.535425 |
Target: 5'- cUCGGCCcCGG-CGGCGCUccgcGUCCGGc -3' miRNA: 3'- -AGCCGGcGCCuGCUGCGAuu--CAGGCU- -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 16900 | 0.73 | 0.544847 |
Target: 5'- aCGGCCGCGG-CGACGaugAGGUCgcaGAu -3' miRNA: 3'- aGCCGGCGCCuGCUGCga-UUCAGg--CU- -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 75159 | 0.73 | 0.544847 |
Target: 5'- gCGGCCGCGGACGcaACGCcgu-UCCGu -3' miRNA: 3'- aGCCGGCGCCUGC--UGCGauucAGGCu -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 37649 | 0.73 | 0.563847 |
Target: 5'- aUCGGCggaacaucucuCGCGGGCGACGUcgAAGaggCCGAa -3' miRNA: 3'- -AGCCG-----------GCGCCUGCUGCGa-UUCa--GGCU- -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 2053 | 0.73 | 0.583018 |
Target: 5'- aUCGGCUGCGGcgccaGCGggaGCGCgGAGUCCa- -3' miRNA: 3'- -AGCCGGCGCC-----UGC---UGCGaUUCAGGcu -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 45434 | 0.74 | 0.507521 |
Target: 5'- cCGGCCGCGG-CGACuCccuGUCCGAc -3' miRNA: 3'- aGCCGGCGCCuGCUGcGauuCAGGCU- -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 142279 | 0.74 | 0.507521 |
Target: 5'- -gGGCCGgGGACGGCGUcgacggGGGaUCCGAc -3' miRNA: 3'- agCCGGCgCCUGCUGCGa-----UUC-AGGCU- -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 137318 | 0.74 | 0.498356 |
Target: 5'- cCGGCCGCGGcguCGGCGCc---UCCGAc -3' miRNA: 3'- aGCCGGCGCCu--GCUGCGauucAGGCU- -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 14788 | 0.8 | 0.256664 |
Target: 5'- gUCGGCCGCGG-CGGCGacgAAGUCCu- -3' miRNA: 3'- -AGCCGGCGCCuGCUGCga-UUCAGGcu -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 15644 | 0.79 | 0.268513 |
Target: 5'- cUCGGCCGCGGGCGGCGag----CCGAc -3' miRNA: 3'- -AGCCGGCGCCUGCUGCgauucaGGCU- -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 79977 | 0.77 | 0.379266 |
Target: 5'- gUCGGCCGaGGAgGGCGCgcggAGGUCCa- -3' miRNA: 3'- -AGCCGGCgCCUgCUGCGa---UUCAGGcu -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 7771 | 0.75 | 0.436481 |
Target: 5'- gUCGGCCGCGGA-GAUGgUGggaucgaggaAGUCCGGg -3' miRNA: 3'- -AGCCGGCGCCUgCUGCgAU----------UCAGGCU- -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 135612 | 0.75 | 0.436481 |
Target: 5'- cCGGCCGUGGACGccaGCgaguucucggGGGUCCGGg -3' miRNA: 3'- aGCCGGCGCCUGCug-CGa---------UUCAGGCU- -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 80639 | 0.75 | 0.480253 |
Target: 5'- cCGGCCguccGCGGcgGCGGCGCcGGGUCCGu -3' miRNA: 3'- aGCCGG----CGCC--UGCUGCGaUUCAGGCu -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 29232 | 0.74 | 0.489266 |
Target: 5'- cCGGCCGCGGGuCG-CGC--AGUCCGu -3' miRNA: 3'- aGCCGGCGCCU-GCuGCGauUCAGGCu -5' |
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9036 | 5' | -58.2 | NC_002512.2 | + | 138056 | 0.74 | 0.489266 |
Target: 5'- cUGGUCGaCGGACGGCGUcAGGUCCu- -3' miRNA: 3'- aGCCGGC-GCCUGCUGCGaUUCAGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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