miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 5' -58.2 NC_002512.2 + 96732 0.66 0.92624
Target:  5'- cCGGcCCGCGGgaaccggacgagcgaGCGGgGCcccGUCCGAg -3'
miRNA:   3'- aGCC-GGCGCC---------------UGCUgCGauuCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 207443 0.66 0.913448
Target:  5'- cUGGCCguaguagcccaGCGGAUGGgGUUGcgcGUCCGAg -3'
miRNA:   3'- aGCCGG-----------CGCCUGCUgCGAUu--CAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 186228 0.66 0.913448
Target:  5'- gCGGCCGCcaccgaGGGCGAgGUcccGGUCCu- -3'
miRNA:   3'- aGCCGGCG------CCUGCUgCGau-UCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 150909 1.09 0.003342
Target:  5'- cUCGGCCGCGGACGACGCUAAGUCCGAg -3'
miRNA:   3'- -AGCCGGCGCCUGCUGCGAUUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 107013 0.66 0.924194
Target:  5'- gUCGGCCGagagcCGGGCG-CGCUcccgacggaaGAGggacCCGAc -3'
miRNA:   3'- -AGCCGGC-----GCCUGCuGCGA----------UUCa---GGCU- -5'
9036 5' -58.2 NC_002512.2 + 90518 0.66 0.924194
Target:  5'- cCGGCgGCGGACGACGggAAcg-CGGu -3'
miRNA:   3'- aGCCGgCGCCUGCUGCgaUUcagGCU- -5'
9036 5' -58.2 NC_002512.2 + 150250 0.66 0.924194
Target:  5'- cUCGGacgaCGagggGGACGACGCcGAGUaCCGc -3'
miRNA:   3'- -AGCCg---GCg---CCUGCUGCGaUUCA-GGCu -5'
9036 5' -58.2 NC_002512.2 + 125102 0.66 0.918928
Target:  5'- --cGCgCGCGGAccccgcCGACGCgccGUCCGAc -3'
miRNA:   3'- agcCG-GCGCCU------GCUGCGauuCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 174703 0.66 0.918928
Target:  5'- gUUGGCCGC-GugGAUGCcgUAGGUCaUGGg -3'
miRNA:   3'- -AGCCGGCGcCugCUGCG--AUUCAG-GCU- -5'
9036 5' -58.2 NC_002512.2 + 189202 0.66 0.918928
Target:  5'- gUC-GCCGCGGGCGGCauGCUcGAcGUCgGAu -3'
miRNA:   3'- -AGcCGGCGCCUGCUG--CGA-UU-CAGgCU- -5'
9036 5' -58.2 NC_002512.2 + 156337 0.66 0.918928
Target:  5'- gCGGCUGCGGGaccugcaGAUGCaccuGUCCa- -3'
miRNA:   3'- aGCCGGCGCCUg------CUGCGauu-CAGGcu -5'
9036 5' -58.2 NC_002512.2 + 184646 0.66 0.918928
Target:  5'- aCGGCgagucCGCGGGCGcCGCgccgAAaUCCGGu -3'
miRNA:   3'- aGCCG-----GCGCCUGCuGCGa---UUcAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 226638 0.66 0.924194
Target:  5'- cCGaGcCCGCGGAccgucgucaccCGACGCgccGGGUCCa- -3'
miRNA:   3'- aGC-C-GGCGCCU-----------GCUGCGa--UUCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 146969 0.66 0.918928
Target:  5'- gCGGCCGCGGcCGAgacuucCGCUGccugaccaCCGAg -3'
miRNA:   3'- aGCCGGCGCCuGCU------GCGAUuca-----GGCU- -5'
9036 5' -58.2 NC_002512.2 + 190013 0.66 0.924194
Target:  5'- gUUGGCCGCGGuCGAgGCcGAcaugauccucuGcUCCGAc -3'
miRNA:   3'- -AGCCGGCGCCuGCUgCGaUU-----------C-AGGCU- -5'
9036 5' -58.2 NC_002512.2 + 39333 0.66 0.918928
Target:  5'- aUGGCaCGCGGcgguacGCGugGCcucaggaGAGUCCGu -3'
miRNA:   3'- aGCCG-GCGCC------UGCugCGa------UUCAGGCu -5'
9036 5' -58.2 NC_002512.2 + 133459 0.66 0.918928
Target:  5'- gCGGUauuuaaaccgGCGGgaGCGAgGCUcGGUCCGAg -3'
miRNA:   3'- aGCCGg---------CGCC--UGCUgCGAuUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 183532 0.66 0.913448
Target:  5'- cUGGCUGCGGAcCGGCGUcaaccGUCUGc -3'
miRNA:   3'- aGCCGGCGCCU-GCUGCGauu--CAGGCu -5'
9036 5' -58.2 NC_002512.2 + 127752 0.66 0.924194
Target:  5'- gCGGCCGUaGACGGC-CaGGGUCCc- -3'
miRNA:   3'- aGCCGGCGcCUGCUGcGaUUCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 181586 0.66 0.924194
Target:  5'- gCGGCgGCagGGGCGGCG---GGUCCGc -3'
miRNA:   3'- aGCCGgCG--CCUGCUGCgauUCAGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.