miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 5' -58.2 NC_002512.2 + 118767 0.65 0.928251
Target:  5'- -aGGaccCCGCGGGCGGCGCcuccgccgCCGGg -3'
miRNA:   3'- agCC---GGCGCCUGCUGCGauuca---GGCU- -5'
9036 5' -58.2 NC_002512.2 + 34939 0.66 0.911763
Target:  5'- -gGGUCGCGGcgacggggagcggaGCGGcCGCgaccGGGUCCGGc -3'
miRNA:   3'- agCCGGCGCC--------------UGCU-GCGa---UUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 83970 0.66 0.913448
Target:  5'- cCGGCgGCGGAugccCGGCGCggggcGGUCgCGc -3'
miRNA:   3'- aGCCGgCGCCU----GCUGCGau---UCAG-GCu -5'
9036 5' -58.2 NC_002512.2 + 126405 0.66 0.913448
Target:  5'- gCGGuCCGCGGcCGcCGCcGAGacCCGAg -3'
miRNA:   3'- aGCC-GGCGCCuGCuGCGaUUCa-GGCU- -5'
9036 5' -58.2 NC_002512.2 + 104876 0.66 0.901851
Target:  5'- -gGGCgGCGccGACGGCGCgacgGGG-CCGGg -3'
miRNA:   3'- agCCGgCGC--CUGCUGCGa---UUCaGGCU- -5'
9036 5' -58.2 NC_002512.2 + 111306 0.66 0.917307
Target:  5'- -gGGCCGCcGAucgcggcucccuuuCGACGCUcccGAcGUCCGAc -3'
miRNA:   3'- agCCGGCGcCU--------------GCUGCGA---UU-CAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 62310 0.66 0.907755
Target:  5'- -aGGCgGCGGAUGAcCGggAAGaagCCGAc -3'
miRNA:   3'- agCCGgCGCCUGCU-GCgaUUCa--GGCU- -5'
9036 5' -58.2 NC_002512.2 + 23931 0.66 0.907755
Target:  5'- cUGuaCGCGGGCGAC-CUGAGgcgCCGc -3'
miRNA:   3'- aGCcgGCGCCUGCUGcGAUUCa--GGCu -5'
9036 5' -58.2 NC_002512.2 + 50485 0.66 0.907755
Target:  5'- aCGGgCGCaGGAUGGCGCgcauccCCGAg -3'
miRNA:   3'- aGCCgGCG-CCUGCUGCGauuca-GGCU- -5'
9036 5' -58.2 NC_002512.2 + 60753 0.66 0.907755
Target:  5'- gCGGCCggGCGGACGaggaGCGCgacgaccGGaCCGAa -3'
miRNA:   3'- aGCCGG--CGCCUGC----UGCGau-----UCaGGCU- -5'
9036 5' -58.2 NC_002512.2 + 121467 0.66 0.913448
Target:  5'- cCGGCCcCGGGCGGCGCaga---CGAg -3'
miRNA:   3'- aGCCGGcGCCUGCUGCGauucagGCU- -5'
9036 5' -58.2 NC_002512.2 + 31648 0.66 0.913448
Target:  5'- -aGGCCGUcccGGACGGCGCgggcgcGG-CCGu -3'
miRNA:   3'- agCCGGCG---CCUGCUGCGau----UCaGGCu -5'
9036 5' -58.2 NC_002512.2 + 102290 0.66 0.906591
Target:  5'- cUGGCCaccaccGUGGACGACGCcuacaucgCCGAg -3'
miRNA:   3'- aGCCGG------CGCCUGCUGCGauuca---GGCU- -5'
9036 5' -58.2 NC_002512.2 + 108000 0.66 0.907755
Target:  5'- -gGGCUGCGGAUGgucauGCGgUGGGUCUu- -3'
miRNA:   3'- agCCGGCGCCUGC-----UGCgAUUCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 102697 0.66 0.901851
Target:  5'- cUCGGgCGUcGGCGACGCaguGGcCCGGa -3'
miRNA:   3'- -AGCCgGCGcCUGCUGCGau-UCaGGCU- -5'
9036 5' -58.2 NC_002512.2 + 222392 0.66 0.913448
Target:  5'- aCGGUgGCGGugGcCG---GGUCCGGa -3'
miRNA:   3'- aGCCGgCGCCugCuGCgauUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 13691 0.66 0.913448
Target:  5'- aCGGCCGCGGcggugaucACGgGCGCgauc-CCGAg -3'
miRNA:   3'- aGCCGGCGCC--------UGC-UGCGauucaGGCU- -5'
9036 5' -58.2 NC_002512.2 + 119473 0.66 0.907755
Target:  5'- gCGGaaGUGGAaGGCGC--GGUCCGGc -3'
miRNA:   3'- aGCCggCGCCUgCUGCGauUCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 2291 0.66 0.907755
Target:  5'- cCGGCCGCugcgGGugGcggggcucugcuGCGCcggcGGUCCGGa -3'
miRNA:   3'- aGCCGGCG----CCugC------------UGCGau--UCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 75184 0.66 0.901851
Target:  5'- gUCGcGCCGCucgacgccGGACGGcCGCUcgGAG-CCGGa -3'
miRNA:   3'- -AGC-CGGCG--------CCUGCU-GCGA--UUCaGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.