miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 3' -55.6 NC_002512.2 + 156412 0.66 0.960761
Target:  5'- cCAGACCCG-GAUcggcaugcUGuccGCGGCCgGGCUgGg -3'
miRNA:   3'- -GUCUGGGCaCUA--------AC---UGCCGG-CUGAgC- -5'
9037 3' -55.6 NC_002512.2 + 216195 0.66 0.960761
Target:  5'- --cGCCCGUGAUcaccgccGCGGCCGucgcCUCGu -3'
miRNA:   3'- gucUGGGCACUAac-----UGCCGGCu---GAGC- -5'
9037 3' -55.6 NC_002512.2 + 110733 0.67 0.957242
Target:  5'- cCAGGgCCGUGuugugcaGGCGGaaggaCGGCUCGg -3'
miRNA:   3'- -GUCUgGGCACuaa----CUGCCg----GCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 124283 0.67 0.957242
Target:  5'- uCGGACCCGgGcgUG-CGGCuCGAC-CGc -3'
miRNA:   3'- -GUCUGGGCaCuaACuGCCG-GCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 91920 0.67 0.953514
Target:  5'- gCGGcGCgCCGUc---GGCGGCCGACUUGg -3'
miRNA:   3'- -GUC-UG-GGCAcuaaCUGCCGGCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 226375 0.67 0.949572
Target:  5'- gCGGGCUCG-GGUgGAgGGCCGACgaCGg -3'
miRNA:   3'- -GUCUGGGCaCUAaCUgCCGGCUGa-GC- -5'
9037 3' -55.6 NC_002512.2 + 9484 0.67 0.947104
Target:  5'- gCGGGCCCGcGAgcggcggguagacGACGGCCGGCc-- -3'
miRNA:   3'- -GUCUGGGCaCUaa-----------CUGCCGGCUGagc -5'
9037 3' -55.6 NC_002512.2 + 196876 0.67 0.943691
Target:  5'- aCAGGcgccCCCGaaaucccccuuccGAUUaGACGGCCGugUCGa -3'
miRNA:   3'- -GUCU----GGGCa------------CUAA-CUGCCGGCugAGC- -5'
9037 3' -55.6 NC_002512.2 + 110855 0.67 0.936441
Target:  5'- aCAGGCCCac----GACGGCCGGCcCGu -3'
miRNA:   3'- -GUCUGGGcacuaaCUGCCGGCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 6512 0.68 0.931622
Target:  5'- uCAGgaGCCCGUGAUaGACG-CCGGaUCGg -3'
miRNA:   3'- -GUC--UGGGCACUAaCUGCcGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 105521 0.68 0.931622
Target:  5'- aGGACgCCGUGGcagccGAacugccCGGCCGACUCc -3'
miRNA:   3'- gUCUG-GGCACUaa---CU------GCCGGCUGAGc -5'
9037 3' -55.6 NC_002512.2 + 79085 0.68 0.931622
Target:  5'- -cGACCCGUGAgUGACGGguCUGGgaCGu -3'
miRNA:   3'- guCUGGGCACUaACUGCC--GGCUgaGC- -5'
9037 3' -55.6 NC_002512.2 + 133813 0.68 0.92658
Target:  5'- -cGACCUGaccgaGACGGCCGAgUCGu -3'
miRNA:   3'- guCUGGGCacuaaCUGCCGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 95967 0.68 0.92658
Target:  5'- gAGGCCCG-GGUUGgcgcagcgGCGGUCGGCgucCGg -3'
miRNA:   3'- gUCUGGGCaCUAAC--------UGCCGGCUGa--GC- -5'
9037 3' -55.6 NC_002512.2 + 217765 0.68 0.92658
Target:  5'- cCGGGCCCGUccccgucgccgGggUcGCGGCCGGCUgGc -3'
miRNA:   3'- -GUCUGGGCA-----------CuaAcUGCCGGCUGAgC- -5'
9037 3' -55.6 NC_002512.2 + 2796 0.68 0.92658
Target:  5'- -cGACCCGgcc--GGCGGCCGGCg-- -3'
miRNA:   3'- guCUGGGCacuaaCUGCCGGCUGagc -5'
9037 3' -55.6 NC_002512.2 + 92651 0.68 0.921315
Target:  5'- gGGACCCGcgcgGAUccggGACGGCCGcC-CGc -3'
miRNA:   3'- gUCUGGGCa---CUAa---CUGCCGGCuGaGC- -5'
9037 3' -55.6 NC_002512.2 + 24842 0.68 0.921315
Target:  5'- cCGGGCCCGcggccGGUcGGCGGCgGACgCGg -3'
miRNA:   3'- -GUCUGGGCa----CUAaCUGCCGgCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 86245 0.68 0.910116
Target:  5'- aGGACCCGgGGgaGAgGGCCGAggCGg -3'
miRNA:   3'- gUCUGGGCaCUaaCUgCCGGCUgaGC- -5'
9037 3' -55.6 NC_002512.2 + 142115 0.69 0.904186
Target:  5'- -cGACCCGUc---GGCGGCCGgaGCUCu -3'
miRNA:   3'- guCUGGGCAcuaaCUGCCGGC--UGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.