miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 3' -55.6 NC_002512.2 + 11309 0.69 0.891672
Target:  5'- gAGACCUccGAgaGAUGGCCGACgCGa -3'
miRNA:   3'- gUCUGGGcaCUaaCUGCCGGCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 56994 0.69 0.891672
Target:  5'- gGGACagCCGUG---GGCGGCCGGgUCGg -3'
miRNA:   3'- gUCUG--GGCACuaaCUGCCGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 65053 0.69 0.900522
Target:  5'- aAGACUCuuuauuaucGGCGGCCGGCUCGg -3'
miRNA:   3'- gUCUGGGcacuaa---CUGCCGGCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 3232 0.69 0.904186
Target:  5'- uGGACCCGgcgcgucgGGUgacGACGGuCCGcggGCUCGg -3'
miRNA:   3'- gUCUGGGCa-------CUAa--CUGCC-GGC---UGAGC- -5'
9037 3' -55.6 NC_002512.2 + 6512 0.68 0.931622
Target:  5'- uCAGgaGCCCGUGAUaGACG-CCGGaUCGg -3'
miRNA:   3'- -GUC--UGGGCACUAaCUGCcGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 95967 0.68 0.92658
Target:  5'- gAGGCCCG-GGUUGgcgcagcgGCGGUCGGCgucCGg -3'
miRNA:   3'- gUCUGGGCaCUAAC--------UGCCGGCUGa--GC- -5'
9037 3' -55.6 NC_002512.2 + 2796 0.68 0.92658
Target:  5'- -cGACCCGgcc--GGCGGCCGGCg-- -3'
miRNA:   3'- guCUGGGCacuaaCUGCCGGCUGagc -5'
9037 3' -55.6 NC_002512.2 + 24842 0.68 0.921315
Target:  5'- cCGGGCCCGcggccGGUcGGCGGCgGACgCGg -3'
miRNA:   3'- -GUCUGGGCa----CUAaCUGCCGgCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 86245 0.68 0.910116
Target:  5'- aGGACCCGgGGgaGAgGGCCGAggCGg -3'
miRNA:   3'- gUCUGGGCaCUaaCUgCCGGCUgaGC- -5'
9037 3' -55.6 NC_002512.2 + 142115 0.69 0.904186
Target:  5'- -cGACCCGUc---GGCGGCCGgaGCUCu -3'
miRNA:   3'- guCUGGGCAcuaaCUGCCGGC--UGAGc -5'
9037 3' -55.6 NC_002512.2 + 156412 0.66 0.960761
Target:  5'- cCAGACCCG-GAUcggcaugcUGuccGCGGCCgGGCUgGg -3'
miRNA:   3'- -GUCUGGGCaCUA--------AC---UGCCGG-CUGAgC- -5'
9037 3' -55.6 NC_002512.2 + 216195 0.66 0.960761
Target:  5'- --cGCCCGUGAUcaccgccGCGGCCGucgcCUCGu -3'
miRNA:   3'- gucUGGGCACUAac-----UGCCGGCu---GAGC- -5'
9037 3' -55.6 NC_002512.2 + 131135 0.66 0.967186
Target:  5'- aGGACCCGaUGGcggggcagGGCGGCCGAg--- -3'
miRNA:   3'- gUCUGGGC-ACUaa------CUGCCGGCUgagc -5'
9037 3' -55.6 NC_002512.2 + 194928 0.66 0.967186
Target:  5'- cCGGACCCGguc---GCGGCCG-CUCc -3'
miRNA:   3'- -GUCUGGGCacuaacUGCCGGCuGAGc -5'
9037 3' -55.6 NC_002512.2 + 227471 0.66 0.970103
Target:  5'- gAGGCCgGg----GGCGGCCGGCcgCGa -3'
miRNA:   3'- gUCUGGgCacuaaCUGCCGGCUGa-GC- -5'
9037 3' -55.6 NC_002512.2 + 120777 0.66 0.972829
Target:  5'- gCAGACCCucagccUGGcgcUGACGGCCacgGugUCGa -3'
miRNA:   3'- -GUCUGGGc-----ACUa--ACUGCCGG---CugAGC- -5'
9037 3' -55.6 NC_002512.2 + 223210 0.66 0.972829
Target:  5'- aCGGcguCCCG-GAgcgcguccCGGCCGGCUCGg -3'
miRNA:   3'- -GUCu--GGGCaCUaacu----GCCGGCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 34389 0.66 0.974628
Target:  5'- -uGGCCgCGUucgacggugaugauGAUUGGCGGCCGuCUUc -3'
miRNA:   3'- guCUGG-GCA--------------CUAACUGCCGGCuGAGc -5'
9037 3' -55.6 NC_002512.2 + 149240 0.66 0.975125
Target:  5'- aCGGACCCGgcgccgccgccgcgGACGGCCGGa-CGg -3'
miRNA:   3'- -GUCUGGGCacuaa---------CUGCCGGCUgaGC- -5'
9037 3' -55.6 NC_002512.2 + 150759 1.09 0.005239
Target:  5'- cCAGACCCGUGAUUGACGGCCGACUCGg -3'
miRNA:   3'- -GUCUGGGCACUAACUGCCGGCUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.