Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 56994 | 0.69 | 0.891672 |
Target: 5'- gGGACagCCGUG---GGCGGCCGGgUCGg -3' miRNA: 3'- gUCUG--GGCACuaaCUGCCGGCUgAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 65053 | 0.69 | 0.900522 |
Target: 5'- aAGACUCuuuauuaucGGCGGCCGGCUCGg -3' miRNA: 3'- gUCUGGGcacuaa---CUGCCGGCUGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 3232 | 0.69 | 0.904186 |
Target: 5'- uGGACCCGgcgcgucgGGUgacGACGGuCCGcggGCUCGg -3' miRNA: 3'- gUCUGGGCa-------CUAa--CUGCC-GGC---UGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 86245 | 0.68 | 0.910116 |
Target: 5'- aGGACCCGgGGgaGAgGGCCGAggCGg -3' miRNA: 3'- gUCUGGGCaCUaaCUgCCGGCUgaGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 24842 | 0.68 | 0.921315 |
Target: 5'- cCGGGCCCGcggccGGUcGGCGGCgGACgCGg -3' miRNA: 3'- -GUCUGGGCa----CUAaCUGCCGgCUGaGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 2796 | 0.68 | 0.92658 |
Target: 5'- -cGACCCGgcc--GGCGGCCGGCg-- -3' miRNA: 3'- guCUGGGCacuaaCUGCCGGCUGagc -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 95967 | 0.68 | 0.92658 |
Target: 5'- gAGGCCCG-GGUUGgcgcagcgGCGGUCGGCgucCGg -3' miRNA: 3'- gUCUGGGCaCUAAC--------UGCCGGCUGa--GC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 6512 | 0.68 | 0.931622 |
Target: 5'- uCAGgaGCCCGUGAUaGACG-CCGGaUCGg -3' miRNA: 3'- -GUC--UGGGCACUAaCUGCcGGCUgAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 196876 | 0.67 | 0.943691 |
Target: 5'- aCAGGcgccCCCGaaaucccccuuccGAUUaGACGGCCGugUCGa -3' miRNA: 3'- -GUCU----GGGCa------------CUAA-CUGCCGGCugAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 142115 | 0.69 | 0.904186 |
Target: 5'- -cGACCCGUc---GGCGGCCGgaGCUCu -3' miRNA: 3'- guCUGGGCAcuaaCUGCCGGC--UGAGc -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 150759 | 1.09 | 0.005239 |
Target: 5'- cCAGACCCGUGAUUGACGGCCGACUCGg -3' miRNA: 3'- -GUCUGGGCACUAACUGCCGGCUGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 156412 | 0.66 | 0.960761 |
Target: 5'- cCAGACCCG-GAUcggcaugcUGuccGCGGCCgGGCUgGg -3' miRNA: 3'- -GUCUGGGCaCUA--------AC---UGCCGG-CUGAgC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 216195 | 0.66 | 0.960761 |
Target: 5'- --cGCCCGUGAUcaccgccGCGGCCGucgcCUCGu -3' miRNA: 3'- gucUGGGCACUAac-----UGCCGGCu---GAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 131135 | 0.66 | 0.967186 |
Target: 5'- aGGACCCGaUGGcggggcagGGCGGCCGAg--- -3' miRNA: 3'- gUCUGGGC-ACUaa------CUGCCGGCUgagc -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 194928 | 0.66 | 0.967186 |
Target: 5'- cCGGACCCGguc---GCGGCCG-CUCc -3' miRNA: 3'- -GUCUGGGCacuaacUGCCGGCuGAGc -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 227471 | 0.66 | 0.970103 |
Target: 5'- gAGGCCgGg----GGCGGCCGGCcgCGa -3' miRNA: 3'- gUCUGGgCacuaaCUGCCGGCUGa-GC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 120777 | 0.66 | 0.972829 |
Target: 5'- gCAGACCCucagccUGGcgcUGACGGCCacgGugUCGa -3' miRNA: 3'- -GUCUGGGc-----ACUa--ACUGCCGG---CugAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 223210 | 0.66 | 0.972829 |
Target: 5'- aCGGcguCCCG-GAgcgcguccCGGCCGGCUCGg -3' miRNA: 3'- -GUCu--GGGCaCUaacu----GCCGGCUGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 34389 | 0.66 | 0.974628 |
Target: 5'- -uGGCCgCGUucgacggugaugauGAUUGGCGGCCGuCUUc -3' miRNA: 3'- guCUGG-GCA--------------CUAACUGCCGGCuGAGc -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 149240 | 0.66 | 0.975125 |
Target: 5'- aCGGACCCGgcgccgccgccgcgGACGGCCGGa-CGg -3' miRNA: 3'- -GUCUGGGCacuaa---------CUGCCGGCUgaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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