miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 3' -55.6 NC_002512.2 + 55639 0.66 0.964074
Target:  5'- cCGGACCCGggcGAggGAggagaGGaCGACUCGa -3'
miRNA:   3'- -GUCUGGGCa--CUaaCUg----CCgGCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 95967 0.68 0.92658
Target:  5'- gAGGCCCG-GGUUGgcgcagcgGCGGUCGGCgucCGg -3'
miRNA:   3'- gUCUGGGCaCUAAC--------UGCCGGCUGa--GC- -5'
9037 3' -55.6 NC_002512.2 + 6512 0.68 0.931622
Target:  5'- uCAGgaGCCCGUGAUaGACG-CCGGaUCGg -3'
miRNA:   3'- -GUC--UGGGCACUAaCUGCcGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 79085 0.68 0.931622
Target:  5'- -cGACCCGUGAgUGACGGguCUGGgaCGu -3'
miRNA:   3'- guCUGGGCACUaACUGCC--GGCUgaGC- -5'
9037 3' -55.6 NC_002512.2 + 196876 0.67 0.943691
Target:  5'- aCAGGcgccCCCGaaaucccccuuccGAUUaGACGGCCGugUCGa -3'
miRNA:   3'- -GUCU----GGGCa------------CUAA-CUGCCGGCugAGC- -5'
9037 3' -55.6 NC_002512.2 + 9484 0.67 0.947104
Target:  5'- gCGGGCCCGcGAgcggcggguagacGACGGCCGGCc-- -3'
miRNA:   3'- -GUCUGGGCaCUaa-----------CUGCCGGCUGagc -5'
9037 3' -55.6 NC_002512.2 + 91920 0.67 0.953514
Target:  5'- gCGGcGCgCCGUc---GGCGGCCGACUUGg -3'
miRNA:   3'- -GUC-UG-GGCAcuaaCUGCCGGCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 16650 0.66 0.960761
Target:  5'- gCAGAUCCGgccgGcgccGUUGGCGGCCacGACcCGg -3'
miRNA:   3'- -GUCUGGGCa---C----UAACUGCCGG--CUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 60258 0.66 0.964074
Target:  5'- gCAGACCCGacaccugGAccUGcCGGCCGACcUGa -3'
miRNA:   3'- -GUCUGGGCa------CUa-ACuGCCGGCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 2796 0.68 0.92658
Target:  5'- -cGACCCGgcc--GGCGGCCGGCg-- -3'
miRNA:   3'- guCUGGGCacuaaCUGCCGGCUGagc -5'
9037 3' -55.6 NC_002512.2 + 24842 0.68 0.921315
Target:  5'- cCGGGCCCGcggccGGUcGGCGGCgGACgCGg -3'
miRNA:   3'- -GUCUGGGCa----CUAaCUGCCGgCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 86245 0.68 0.910116
Target:  5'- aGGACCCGgGGgaGAgGGCCGAggCGg -3'
miRNA:   3'- gUCUGGGCaCUaaCUgCCGGCUgaGC- -5'
9037 3' -55.6 NC_002512.2 + 29954 0.73 0.678603
Target:  5'- aCAG-CCgGUGAgcGGCGGCCGGCcgCGa -3'
miRNA:   3'- -GUCuGGgCACUaaCUGCCGGCUGa-GC- -5'
9037 3' -55.6 NC_002512.2 + 27960 0.71 0.782503
Target:  5'- cCGGGCCCGUcgccGAUgGGCGGCCGGg-CGa -3'
miRNA:   3'- -GUCUGGGCA----CUAaCUGCCGGCUgaGC- -5'
9037 3' -55.6 NC_002512.2 + 78844 0.71 0.808657
Target:  5'- aGGACCgCGUGAcgGGCcGCCGcCUCGa -3'
miRNA:   3'- gUCUGG-GCACUaaCUGcCGGCuGAGC- -5'
9037 3' -55.6 NC_002512.2 + 11309 0.69 0.891672
Target:  5'- gAGACCUccGAgaGAUGGCCGACgCGa -3'
miRNA:   3'- gUCUGGGcaCUaaCUGCCGGCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 56994 0.69 0.891672
Target:  5'- gGGACagCCGUG---GGCGGCCGGgUCGg -3'
miRNA:   3'- gUCUG--GGCACuaaCUGCCGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 65053 0.69 0.900522
Target:  5'- aAGACUCuuuauuaucGGCGGCCGGCUCGg -3'
miRNA:   3'- gUCUGGGcacuaa---CUGCCGGCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 3232 0.69 0.904186
Target:  5'- uGGACCCGgcgcgucgGGUgacGACGGuCCGcggGCUCGg -3'
miRNA:   3'- gUCUGGGCa-------CUAa--CUGCC-GGC---UGAGC- -5'
9037 3' -55.6 NC_002512.2 + 142115 0.69 0.904186
Target:  5'- -cGACCCGUc---GGCGGCCGgaGCUCu -3'
miRNA:   3'- guCUGGGCAcuaaCUGCCGGC--UGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.