miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 3' -55.6 NC_002512.2 + 150759 1.09 0.005239
Target:  5'- cCAGACCCGUGAUUGACGGCCGACUCGg -3'
miRNA:   3'- -GUCUGGGCACUAACUGCCGGCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 117121 0.75 0.570244
Target:  5'- aAGGCcaCCGUGucgcggGACGGCCGGCUCu -3'
miRNA:   3'- gUCUG--GGCACuaa---CUGCCGGCUGAGc -5'
9037 3' -55.6 NC_002512.2 + 29954 0.73 0.678603
Target:  5'- aCAG-CCgGUGAgcGGCGGCCGGCcgCGa -3'
miRNA:   3'- -GUCuGGgCACUaaCUGCCGGCUGa-GC- -5'
9037 3' -55.6 NC_002512.2 + 27960 0.71 0.782503
Target:  5'- cCGGGCCCGUcgccGAUgGGCGGCCGGg-CGa -3'
miRNA:   3'- -GUCUGGGCA----CUAaCUGCCGGCUgaGC- -5'
9037 3' -55.6 NC_002512.2 + 156469 0.71 0.791358
Target:  5'- gGGACUCGgg---GGCGGCgGGCUCGg -3'
miRNA:   3'- gUCUGGGCacuaaCUGCCGgCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 78844 0.71 0.808657
Target:  5'- aGGACCgCGUGAcgGGCcGCCGcCUCGa -3'
miRNA:   3'- gUCUGG-GCACUaaCUGcCGGCuGAGC- -5'
9037 3' -55.6 NC_002512.2 + 226306 0.71 0.817086
Target:  5'- gAGACCCccgGGgccUGugGGCCGugGCUCGg -3'
miRNA:   3'- gUCUGGGca-CUa--ACugCCGGC--UGAGC- -5'
9037 3' -55.6 NC_002512.2 + 157145 0.7 0.841403
Target:  5'- gCGGGCCCGgGGcgGGCGGCgGGC-CGg -3'
miRNA:   3'- -GUCUGGGCaCUaaCUGCCGgCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 156293 0.7 0.849163
Target:  5'- -uGGCCCGUcg-UGAaguCGGCCGugUCGc -3'
miRNA:   3'- guCUGGGCAcuaACU---GCCGGCugAGC- -5'
9037 3' -55.6 NC_002512.2 + 196413 0.69 0.871317
Target:  5'- gGGACgCGggGGgcGGCGGCCGGgUCGg -3'
miRNA:   3'- gUCUGgGCa-CUaaCUGCCGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 162250 0.69 0.878308
Target:  5'- gGGGCCCGUG---GACGaCCGugUCGc -3'
miRNA:   3'- gUCUGGGCACuaaCUGCcGGCugAGC- -5'
9037 3' -55.6 NC_002512.2 + 133220 0.69 0.878308
Target:  5'- -cGACCuCGUaGAagaggUGACGGCCGGCcCGu -3'
miRNA:   3'- guCUGG-GCA-CUa----ACUGCCGGCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 56994 0.69 0.891672
Target:  5'- gGGACagCCGUG---GGCGGCCGGgUCGg -3'
miRNA:   3'- gUCUG--GGCACuaaCUGCCGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 11309 0.69 0.891672
Target:  5'- gAGACCUccGAgaGAUGGCCGACgCGa -3'
miRNA:   3'- gUCUGGGcaCUaaCUGCCGGCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 65053 0.69 0.900522
Target:  5'- aAGACUCuuuauuaucGGCGGCCGGCUCGg -3'
miRNA:   3'- gUCUGGGcacuaa---CUGCCGGCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 142115 0.69 0.904186
Target:  5'- -cGACCCGUc---GGCGGCCGgaGCUCu -3'
miRNA:   3'- guCUGGGCAcuaaCUGCCGGC--UGAGc -5'
9037 3' -55.6 NC_002512.2 + 130243 0.69 0.904186
Target:  5'- uGGGCCCcggcgugcuugGUGAggaucagGGCGGCCGGCaUCa -3'
miRNA:   3'- gUCUGGG-----------CACUaa-----CUGCCGGCUG-AGc -5'
9037 3' -55.6 NC_002512.2 + 3232 0.69 0.904186
Target:  5'- uGGACCCGgcgcgucgGGUgacGACGGuCCGcggGCUCGg -3'
miRNA:   3'- gUCUGGGCa-------CUAa--CUGCC-GGC---UGAGC- -5'
9037 3' -55.6 NC_002512.2 + 86245 0.68 0.910116
Target:  5'- aGGACCCGgGGgaGAgGGCCGAggCGg -3'
miRNA:   3'- gUCUGGGCaCUaaCUgCCGGCUgaGC- -5'
9037 3' -55.6 NC_002512.2 + 24842 0.68 0.921315
Target:  5'- cCGGGCCCGcggccGGUcGGCGGCgGACgCGg -3'
miRNA:   3'- -GUCUGGGCa----CUAaCUGCCGgCUGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.