Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 2796 | 0.68 | 0.92658 |
Target: 5'- -cGACCCGgcc--GGCGGCCGGCg-- -3' miRNA: 3'- guCUGGGCacuaaCUGCCGGCUGagc -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 2832 | 0.66 | 0.972829 |
Target: 5'- gCGGGCCCG-GAc-GACGGCgGGCa-- -3' miRNA: 3'- -GUCUGGGCaCUaaCUGCCGgCUGagc -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 3232 | 0.69 | 0.904186 |
Target: 5'- uGGACCCGgcgcgucgGGUgacGACGGuCCGcggGCUCGg -3' miRNA: 3'- gUCUGGGCa-------CUAa--CUGCC-GGC---UGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 6512 | 0.68 | 0.931622 |
Target: 5'- uCAGgaGCCCGUGAUaGACG-CCGGaUCGg -3' miRNA: 3'- -GUC--UGGGCACUAaCUGCcGGCUgAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 9484 | 0.67 | 0.947104 |
Target: 5'- gCGGGCCCGcGAgcggcggguagacGACGGCCGGCc-- -3' miRNA: 3'- -GUCUGGGCaCUaa-----------CUGCCGGCUGagc -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 9975 | 0.66 | 0.975371 |
Target: 5'- gAGACCgacgacgagaCGaGAggagGGCGGUCGGCUCGu -3' miRNA: 3'- gUCUGG----------GCaCUaa--CUGCCGGCUGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 11309 | 0.69 | 0.891672 |
Target: 5'- gAGACCUccGAgaGAUGGCCGACgCGa -3' miRNA: 3'- gUCUGGGcaCUaaCUGCCGGCUGaGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 16650 | 0.66 | 0.960761 |
Target: 5'- gCAGAUCCGgccgGcgccGUUGGCGGCCacGACcCGg -3' miRNA: 3'- -GUCUGGGCa---C----UAACUGCCGG--CUGaGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 24842 | 0.68 | 0.921315 |
Target: 5'- cCGGGCCCGcggccGGUcGGCGGCgGACgCGg -3' miRNA: 3'- -GUCUGGGCa----CUAaCUGCCGgCUGaGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 27960 | 0.71 | 0.782503 |
Target: 5'- cCGGGCCCGUcgccGAUgGGCGGCCGGg-CGa -3' miRNA: 3'- -GUCUGGGCA----CUAaCUGCCGGCUgaGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 29954 | 0.73 | 0.678603 |
Target: 5'- aCAG-CCgGUGAgcGGCGGCCGGCcgCGa -3' miRNA: 3'- -GUCuGGgCACUaaCUGCCGGCUGa-GC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 34389 | 0.66 | 0.974628 |
Target: 5'- -uGGCCgCGUucgacggugaugauGAUUGGCGGCCGuCUUc -3' miRNA: 3'- guCUGG-GCA--------------CUAACUGCCGGCuGAGc -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 37993 | 0.66 | 0.975371 |
Target: 5'- ---uCCCauGUGAaugGACGGCCG-CUCGg -3' miRNA: 3'- gucuGGG--CACUaa-CUGCCGGCuGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 41594 | 0.66 | 0.975371 |
Target: 5'- aAGGCCacccGGUUGcCGGCCGugaACUCGa -3' miRNA: 3'- gUCUGGgca-CUAACuGCCGGC---UGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 55639 | 0.66 | 0.964074 |
Target: 5'- cCGGACCCGggcGAggGAggagaGGaCGACUCGa -3' miRNA: 3'- -GUCUGGGCa--CUaaCUg----CCgGCUGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 56994 | 0.69 | 0.891672 |
Target: 5'- gGGACagCCGUG---GGCGGCCGGgUCGg -3' miRNA: 3'- gUCUG--GGCACuaaCUGCCGGCUgAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 60258 | 0.66 | 0.964074 |
Target: 5'- gCAGACCCGacaccugGAccUGcCGGCCGACcUGa -3' miRNA: 3'- -GUCUGGGCa------CUa-ACuGCCGGCUGaGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 65053 | 0.69 | 0.900522 |
Target: 5'- aAGACUCuuuauuaucGGCGGCCGGCUCGg -3' miRNA: 3'- gUCUGGGcacuaa---CUGCCGGCUGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 78844 | 0.71 | 0.808657 |
Target: 5'- aGGACCgCGUGAcgGGCcGCCGcCUCGa -3' miRNA: 3'- gUCUGG-GCACUaaCUGcCGGCuGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 79085 | 0.68 | 0.931622 |
Target: 5'- -cGACCCGUGAgUGACGGguCUGGgaCGu -3' miRNA: 3'- guCUGGGCACUaACUGCC--GGCUgaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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