miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 3' -55.6 NC_002512.2 + 126573 0.66 0.96982
Target:  5'- cCGGGCCuCGgccguccUGuccuacGACGGCCGGCUCc -3'
miRNA:   3'- -GUCUGG-GC-------ACuaa---CUGCCGGCUGAGc -5'
9037 3' -55.6 NC_002512.2 + 34389 0.66 0.974628
Target:  5'- -uGGCCgCGUucgacggugaugauGAUUGGCGGCCGuCUUc -3'
miRNA:   3'- guCUGG-GCA--------------CUAACUGCCGGCuGAGc -5'
9037 3' -55.6 NC_002512.2 + 223210 0.66 0.972829
Target:  5'- aCGGcguCCCG-GAgcgcguccCGGCCGGCUCGg -3'
miRNA:   3'- -GUCu--GGGCaCUaacu----GCCGGCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 120777 0.66 0.972829
Target:  5'- gCAGACCCucagccUGGcgcUGACGGCCacgGugUCGa -3'
miRNA:   3'- -GUCUGGGc-----ACUa--ACUGCCGG---CugAGC- -5'
9037 3' -55.6 NC_002512.2 + 227471 0.66 0.970103
Target:  5'- gAGGCCgGg----GGCGGCCGGCcgCGa -3'
miRNA:   3'- gUCUGGgCacuaaCUGCCGGCUGa-GC- -5'
9037 3' -55.6 NC_002512.2 + 194928 0.66 0.967186
Target:  5'- cCGGACCCGguc---GCGGCCG-CUCc -3'
miRNA:   3'- -GUCUGGGCacuaacUGCCGGCuGAGc -5'
9037 3' -55.6 NC_002512.2 + 131135 0.66 0.967186
Target:  5'- aGGACCCGaUGGcggggcagGGCGGCCGAg--- -3'
miRNA:   3'- gUCUGGGC-ACUaa------CUGCCGGCUgagc -5'
9037 3' -55.6 NC_002512.2 + 16650 0.66 0.960761
Target:  5'- gCAGAUCCGgccgGcgccGUUGGCGGCCacGACcCGg -3'
miRNA:   3'- -GUCUGGGCa---C----UAACUGCCGG--CUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 60258 0.66 0.964074
Target:  5'- gCAGACCCGacaccugGAccUGcCGGCCGACcUGa -3'
miRNA:   3'- -GUCUGGGCa------CUa-ACuGCCGGCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 149240 0.66 0.975125
Target:  5'- aCGGACCCGgcgccgccgccgcgGACGGCCGGa-CGg -3'
miRNA:   3'- -GUCUGGGCacuaa---------CUGCCGGCUgaGC- -5'
9037 3' -55.6 NC_002512.2 + 130082 0.66 0.975371
Target:  5'- cCAG-CUCGUaGUacccGACGGCCGAgUCGa -3'
miRNA:   3'- -GUCuGGGCAcUAa---CUGCCGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 101979 0.66 0.970103
Target:  5'- gCGGGCUCGUGGccgauccGACGGUCGAguacCUCa -3'
miRNA:   3'- -GUCUGGGCACUaa-----CUGCCGGCU----GAGc -5'
9037 3' -55.6 NC_002512.2 + 2832 0.66 0.972829
Target:  5'- gCGGGCCCG-GAc-GACGGCgGGCa-- -3'
miRNA:   3'- -GUCUGGGCaCUaaCUGCCGgCUGagc -5'
9037 3' -55.6 NC_002512.2 + 84759 0.66 0.972565
Target:  5'- gUAGGCCagguaggCGUaGUaGAUGGCCGugUCGg -3'
miRNA:   3'- -GUCUGG-------GCAcUAaCUGCCGGCugAGC- -5'
9037 3' -55.6 NC_002512.2 + 9975 0.66 0.975371
Target:  5'- gAGACCgacgacgagaCGaGAggagGGCGGUCGGCUCGu -3'
miRNA:   3'- gUCUGG----------GCaCUaa--CUGCCGGCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 37993 0.66 0.975371
Target:  5'- ---uCCCauGUGAaugGACGGCCG-CUCGg -3'
miRNA:   3'- gucuGGG--CACUaa-CUGCCGGCuGAGC- -5'
9037 3' -55.6 NC_002512.2 + 41594 0.66 0.975371
Target:  5'- aAGGCCacccGGUUGcCGGCCGugaACUCGa -3'
miRNA:   3'- gUCUGGgca-CUAACuGCCGGC---UGAGC- -5'
9037 3' -55.6 NC_002512.2 + 105109 0.66 0.972829
Target:  5'- cCGGACCCGgGAcUGcGCGGUCGuCUgGg -3'
miRNA:   3'- -GUCUGGGCaCUaAC-UGCCGGCuGAgC- -5'
9037 3' -55.6 NC_002512.2 + 217431 0.66 0.975371
Target:  5'- --uACCCGaGA-UGACGGCCGAUa-- -3'
miRNA:   3'- gucUGGGCaCUaACUGCCGGCUGagc -5'
9037 3' -55.6 NC_002512.2 + 55639 0.66 0.964074
Target:  5'- cCGGACCCGggcGAggGAggagaGGaCGACUCGa -3'
miRNA:   3'- -GUCUGGGCa--CUaaCUg----CCgGCUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.