miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 3' -55.6 NC_002512.2 + 84759 0.66 0.972565
Target:  5'- gUAGGCCagguaggCGUaGUaGAUGGCCGugUCGg -3'
miRNA:   3'- -GUCUGG-------GCAcUAaCUGCCGGCugAGC- -5'
9037 3' -55.6 NC_002512.2 + 86245 0.68 0.910116
Target:  5'- aGGACCCGgGGgaGAgGGCCGAggCGg -3'
miRNA:   3'- gUCUGGGCaCUaaCUgCCGGCUgaGC- -5'
9037 3' -55.6 NC_002512.2 + 91920 0.67 0.953514
Target:  5'- gCGGcGCgCCGUc---GGCGGCCGACUUGg -3'
miRNA:   3'- -GUC-UG-GGCAcuaaCUGCCGGCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 92651 0.68 0.921315
Target:  5'- gGGACCCGcgcgGAUccggGACGGCCGcC-CGc -3'
miRNA:   3'- gUCUGGGCa---CUAa---CUGCCGGCuGaGC- -5'
9037 3' -55.6 NC_002512.2 + 95967 0.68 0.92658
Target:  5'- gAGGCCCG-GGUUGgcgcagcgGCGGUCGGCgucCGg -3'
miRNA:   3'- gUCUGGGCaCUAAC--------UGCCGGCUGa--GC- -5'
9037 3' -55.6 NC_002512.2 + 101979 0.66 0.970103
Target:  5'- gCGGGCUCGUGGccgauccGACGGUCGAguacCUCa -3'
miRNA:   3'- -GUCUGGGCACUaa-----CUGCCGGCU----GAGc -5'
9037 3' -55.6 NC_002512.2 + 105109 0.66 0.972829
Target:  5'- cCGGACCCGgGAcUGcGCGGUCGuCUgGg -3'
miRNA:   3'- -GUCUGGGCaCUaAC-UGCCGGCuGAgC- -5'
9037 3' -55.6 NC_002512.2 + 105521 0.68 0.931622
Target:  5'- aGGACgCCGUGGcagccGAacugccCGGCCGACUCc -3'
miRNA:   3'- gUCUG-GGCACUaa---CU------GCCGGCUGAGc -5'
9037 3' -55.6 NC_002512.2 + 110733 0.67 0.957242
Target:  5'- cCAGGgCCGUGuugugcaGGCGGaaggaCGGCUCGg -3'
miRNA:   3'- -GUCUgGGCACuaa----CUGCCg----GCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 110855 0.67 0.936441
Target:  5'- aCAGGCCCac----GACGGCCGGCcCGu -3'
miRNA:   3'- -GUCUGGGcacuaaCUGCCGGCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 117121 0.75 0.570244
Target:  5'- aAGGCcaCCGUGucgcggGACGGCCGGCUCu -3'
miRNA:   3'- gUCUG--GGCACuaa---CUGCCGGCUGAGc -5'
9037 3' -55.6 NC_002512.2 + 120777 0.66 0.972829
Target:  5'- gCAGACCCucagccUGGcgcUGACGGCCacgGugUCGa -3'
miRNA:   3'- -GUCUGGGc-----ACUa--ACUGCCGG---CugAGC- -5'
9037 3' -55.6 NC_002512.2 + 124283 0.67 0.957242
Target:  5'- uCGGACCCGgGcgUG-CGGCuCGAC-CGc -3'
miRNA:   3'- -GUCUGGGCaCuaACuGCCG-GCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 126573 0.66 0.96982
Target:  5'- cCGGGCCuCGgccguccUGuccuacGACGGCCGGCUCc -3'
miRNA:   3'- -GUCUGG-GC-------ACuaa---CUGCCGGCUGAGc -5'
9037 3' -55.6 NC_002512.2 + 130082 0.66 0.975371
Target:  5'- cCAG-CUCGUaGUacccGACGGCCGAgUCGa -3'
miRNA:   3'- -GUCuGGGCAcUAa---CUGCCGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 130243 0.69 0.904186
Target:  5'- uGGGCCCcggcgugcuugGUGAggaucagGGCGGCCGGCaUCa -3'
miRNA:   3'- gUCUGGG-----------CACUaa-----CUGCCGGCUG-AGc -5'
9037 3' -55.6 NC_002512.2 + 131135 0.66 0.967186
Target:  5'- aGGACCCGaUGGcggggcagGGCGGCCGAg--- -3'
miRNA:   3'- gUCUGGGC-ACUaa------CUGCCGGCUgagc -5'
9037 3' -55.6 NC_002512.2 + 133220 0.69 0.878308
Target:  5'- -cGACCuCGUaGAagaggUGACGGCCGGCcCGu -3'
miRNA:   3'- guCUGG-GCA-CUa----ACUGCCGGCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 133813 0.68 0.92658
Target:  5'- -cGACCUGaccgaGACGGCCGAgUCGu -3'
miRNA:   3'- guCUGGGCacuaaCUGCCGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 142115 0.69 0.904186
Target:  5'- -cGACCCGUc---GGCGGCCGgaGCUCu -3'
miRNA:   3'- guCUGGGCAcuaaCUGCCGGC--UGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.