Results 1 - 20 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 217765 | 0.68 | 0.92658 |
Target: 5'- cCGGGCCCGUccccgucgccgGggUcGCGGCCGGCUgGc -3' miRNA: 3'- -GUCUGGGCA-----------CuaAcUGCCGGCUGAgC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 130082 | 0.66 | 0.975371 |
Target: 5'- cCAG-CUCGUaGUacccGACGGCCGAgUCGa -3' miRNA: 3'- -GUCuGGGCAcUAa---CUGCCGGCUgAGC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 149240 | 0.66 | 0.975125 |
Target: 5'- aCGGACCCGgcgccgccgccgcgGACGGCCGGa-CGg -3' miRNA: 3'- -GUCUGGGCacuaa---------CUGCCGGCUgaGC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 156412 | 0.66 | 0.960761 |
Target: 5'- cCAGACCCG-GAUcggcaugcUGuccGCGGCCgGGCUgGg -3' miRNA: 3'- -GUCUGGGCaCUA--------AC---UGCCGG-CUGAgC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 124283 | 0.67 | 0.957242 |
Target: 5'- uCGGACCCGgGcgUG-CGGCuCGAC-CGc -3' miRNA: 3'- -GUCUGGGCaCuaACuGCCG-GCUGaGC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 34389 | 0.66 | 0.974628 |
Target: 5'- -uGGCCgCGUucgacggugaugauGAUUGGCGGCCGuCUUc -3' miRNA: 3'- guCUGG-GCA--------------CUAACUGCCGGCuGAGc -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 194928 | 0.66 | 0.967186 |
Target: 5'- cCGGACCCGguc---GCGGCCG-CUCc -3' miRNA: 3'- -GUCUGGGCacuaacUGCCGGCuGAGc -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 216195 | 0.66 | 0.960761 |
Target: 5'- --cGCCCGUGAUcaccgccGCGGCCGucgcCUCGu -3' miRNA: 3'- gucUGGGCACUAac-----UGCCGGCu---GAGC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 105521 | 0.68 | 0.931622 |
Target: 5'- aGGACgCCGUGGcagccGAacugccCGGCCGACUCc -3' miRNA: 3'- gUCUG-GGCACUaa---CU------GCCGGCUGAGc -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 130243 | 0.69 | 0.904186 |
Target: 5'- uGGGCCCcggcgugcuugGUGAggaucagGGCGGCCGGCaUCa -3' miRNA: 3'- gUCUGGG-----------CACUaa-----CUGCCGGCUG-AGc -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 150759 | 1.09 | 0.005239 |
Target: 5'- cCAGACCCGUGAUUGACGGCCGACUCGg -3' miRNA: 3'- -GUCUGGGCACUAACUGCCGGCUGAGC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 120777 | 0.66 | 0.972829 |
Target: 5'- gCAGACCCucagccUGGcgcUGACGGCCacgGugUCGa -3' miRNA: 3'- -GUCUGGGc-----ACUa--ACUGCCGG---CugAGC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 223210 | 0.66 | 0.972829 |
Target: 5'- aCGGcguCCCG-GAgcgcguccCGGCCGGCUCGg -3' miRNA: 3'- -GUCu--GGGCaCUaacu----GCCGGCUGAGC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 226375 | 0.67 | 0.949572 |
Target: 5'- gCGGGCUCG-GGUgGAgGGCCGACgaCGg -3' miRNA: 3'- -GUCUGGGCaCUAaCUgCCGGCUGa-GC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 110855 | 0.67 | 0.936441 |
Target: 5'- aCAGGCCCac----GACGGCCGGCcCGu -3' miRNA: 3'- -GUCUGGGcacuaaCUGCCGGCUGaGC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 227471 | 0.66 | 0.970103 |
Target: 5'- gAGGCCgGg----GGCGGCCGGCcgCGa -3' miRNA: 3'- gUCUGGgCacuaaCUGCCGGCUGa-GC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 92651 | 0.68 | 0.921315 |
Target: 5'- gGGACCCGcgcgGAUccggGACGGCCGcC-CGc -3' miRNA: 3'- gUCUGGGCa---CUAa---CUGCCGGCuGaGC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 162250 | 0.69 | 0.878308 |
Target: 5'- gGGGCCCGUG---GACGaCCGugUCGc -3' miRNA: 3'- gUCUGGGCACuaaCUGCcGGCugAGC- -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 131135 | 0.66 | 0.967186 |
Target: 5'- aGGACCCGaUGGcggggcagGGCGGCCGAg--- -3' miRNA: 3'- gUCUGGGC-ACUaa------CUGCCGGCUgagc -5' |
|||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 110733 | 0.67 | 0.957242 |
Target: 5'- cCAGGgCCGUGuugugcaGGCGGaaggaCGGCUCGg -3' miRNA: 3'- -GUCUgGGCACuaa----CUGCCg----GCUGAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home