miRNA display CGI


Results 41 - 60 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 3' -58.9 NC_002512.2 + 55533 0.72 0.594543
Target:  5'- gGCCaUCcgcaUCCCggcGGACgAGGGCGCGGCg -3'
miRNA:   3'- gUGGaAGc---AGGG---CCUG-UCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 24246 0.71 0.603235
Target:  5'- cCGCCgacggCGUCCCccgcgggcaggaaGGACGGcGGCGaCGGCa -3'
miRNA:   3'- -GUGGaa---GCAGGG-------------CCUGUC-UCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 102648 0.71 0.604202
Target:  5'- gACCccgaugUCGUagaCCGGGgAGAGgGCGGCc -3'
miRNA:   3'- gUGGa-----AGCAg--GGCCUgUCUCgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 221143 0.71 0.604202
Target:  5'- gACCgcguccccgUCGUCgaCGGGCGGGcgcGCGCGGCc -3'
miRNA:   3'- gUGGa--------AGCAGg-GCCUGUCU---CGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 205051 0.71 0.604202
Target:  5'- gACCggccgCGggCCCGGACcuacuggcuggAGAGCGgCGGCg -3'
miRNA:   3'- gUGGaa---GCa-GGGCCUG-----------UCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 221359 0.71 0.612912
Target:  5'- uCGCCgcuccgugUCGgugguguguccucUCCuCGGGCGGGGCGCGGg -3'
miRNA:   3'- -GUGGa-------AGC-------------AGG-GCCUGUCUCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 126335 0.71 0.61388
Target:  5'- gGCCgccgCGUCCgGGACGG-GCGC-GCa -3'
miRNA:   3'- gUGGaa--GCAGGgCCUGUCuCGCGcCG- -5'
9045 3' -58.9 NC_002512.2 + 163862 0.71 0.61388
Target:  5'- -uCCUgcUCGggaaccaCCGGACGGAGCGCuGCg -3'
miRNA:   3'- guGGA--AGCag-----GGCCUGUCUCGCGcCG- -5'
9045 3' -58.9 NC_002512.2 + 191947 0.71 0.623571
Target:  5'- gGCCUacaugcuccUCGcCCCGGAgGGcaAGCGgGGCa -3'
miRNA:   3'- gUGGA---------AGCaGGGCCUgUC--UCGCgCCG- -5'
9045 3' -58.9 NC_002512.2 + 196532 0.71 0.623571
Target:  5'- cCGCaagcaCGUCUCGGACA-AGUGCGGCu -3'
miRNA:   3'- -GUGgaa--GCAGGGCCUGUcUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 101088 0.71 0.623571
Target:  5'- gACCUcUCGcugaagacCCCGGcCAGcGCGCGGCg -3'
miRNA:   3'- gUGGA-AGCa-------GGGCCuGUCuCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 43077 0.71 0.642963
Target:  5'- gCACCg--GUCCCGG----GGCGCGGCg -3'
miRNA:   3'- -GUGGaagCAGGGCCugucUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 82206 0.71 0.65265
Target:  5'- gGCCggCGUCCUcccgGGGCGGgaAGCGgGGCc -3'
miRNA:   3'- gUGGaaGCAGGG----CCUGUC--UCGCgCCG- -5'
9045 3' -58.9 NC_002512.2 + 152791 0.71 0.65265
Target:  5'- gGCCUcCGUCUCGGA-GGucCGCGGCg -3'
miRNA:   3'- gUGGAaGCAGGGCCUgUCucGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 95014 0.71 0.65265
Target:  5'- uCGCg-UCGUCCgGGGCAGGgGgGCGGUc -3'
miRNA:   3'- -GUGgaAGCAGGgCCUGUCU-CgCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 82020 0.7 0.661357
Target:  5'- aGCCgUCG-CCCGGGuCGGGGUcgcgccgGCGGCg -3'
miRNA:   3'- gUGGaAGCaGGGCCU-GUCUCG-------CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 136821 0.7 0.662323
Target:  5'- uCGCUcUCGUCCCGGuACAGcGCcuGgGGCa -3'
miRNA:   3'- -GUGGaAGCAGGGCC-UGUCuCG--CgCCG- -5'
9045 3' -58.9 NC_002512.2 + 153381 0.7 0.662323
Target:  5'- gGCUggCGgUCCGGAgcgacgUGGAGCGCGGCg -3'
miRNA:   3'- gUGGaaGCaGGGCCU------GUCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 191135 0.7 0.662323
Target:  5'- aAUCUUCGUCCauggcguugaaUGGcCAGuGUGCGGCu -3'
miRNA:   3'- gUGGAAGCAGG-----------GCCuGUCuCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 194315 0.7 0.662323
Target:  5'- uCACCUuccUCGUggCCCgGGACGGuuGCGUGGUc -3'
miRNA:   3'- -GUGGA---AGCA--GGG-CCUGUCu-CGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.