miRNA display CGI


Results 41 - 60 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 5' -63 NC_002512.2 + 127195 0.73 0.309699
Target:  5'- uGCGu-CGCCGAC-GCCCGAGaCGGGGg -3'
miRNA:   3'- -UGCcuGCGGCUGuCGGGCUC-GCCCUg -5'
9046 5' -63 NC_002512.2 + 219281 0.73 0.315677
Target:  5'- gGCGGACGCCGACgccguGGCCCGcuucgucguccgcGGCcacgGGGAg -3'
miRNA:   3'- -UGCCUGCGGCUG-----UCGGGC-------------UCG----CCCUg -5'
9046 5' -63 NC_002512.2 + 7698 0.73 0.316346
Target:  5'- aACGGAcgaCGCCGGCcgcGGCCCGGGaguaggcguCGGGAUa -3'
miRNA:   3'- -UGCCU---GCGGCUG---UCGGGCUC---------GCCCUG- -5'
9046 5' -63 NC_002512.2 + 156081 0.73 0.316347
Target:  5'- cCGGGCGCCGGCAGUUCGu-CGaGGACu -3'
miRNA:   3'- uGCCUGCGGCUGUCGGGCucGC-CCUG- -5'
9046 5' -63 NC_002512.2 + 128194 0.73 0.323101
Target:  5'- aGCGGGcCGCCGGCGGgaCCGGGgacgGGGACg -3'
miRNA:   3'- -UGCCU-GCGGCUGUCg-GGCUCg---CCCUG- -5'
9046 5' -63 NC_002512.2 + 106770 0.73 0.323101
Target:  5'- gACGGcCGCCGACGGC----GCGGGACg -3'
miRNA:   3'- -UGCCuGCGGCUGUCGggcuCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 30423 0.73 0.329962
Target:  5'- cGCGGGCGUCGucGCGGCCCuGAacGCGGGcCu -3'
miRNA:   3'- -UGCCUGCGGC--UGUCGGG-CU--CGCCCuG- -5'
9046 5' -63 NC_002512.2 + 121861 0.73 0.329962
Target:  5'- -aGGACGgCGGCGGaUCCGAGgGGGAg -3'
miRNA:   3'- ugCCUGCgGCUGUC-GGGCUCgCCCUg -5'
9046 5' -63 NC_002512.2 + 97341 0.73 0.336228
Target:  5'- gGCGGAgagGCCGACGGCgCCGcccgcggAGCGGGGa -3'
miRNA:   3'- -UGCCUg--CGGCUGUCG-GGC-------UCGCCCUg -5'
9046 5' -63 NC_002512.2 + 165954 0.73 0.33693
Target:  5'- -aGGACGCCGGCcgcuucaccaAGCUgcGGCGGGGCg -3'
miRNA:   3'- ugCCUGCGGCUG----------UCGGgcUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 107239 0.73 0.344005
Target:  5'- uGCGG-CGCCGuCAGCaCCGAGUGGcGGu -3'
miRNA:   3'- -UGCCuGCGGCuGUCG-GGCUCGCC-CUg -5'
9046 5' -63 NC_002512.2 + 81350 0.73 0.351186
Target:  5'- gUGGGCGCCucccucGCGGCCgGGGCGGGcgGCg -3'
miRNA:   3'- uGCCUGCGGc-----UGUCGGgCUCGCCC--UG- -5'
9046 5' -63 NC_002512.2 + 76516 0.73 0.351186
Target:  5'- cCGGAccgccagcCGCCGccCAGCCC-AGCGGGACc -3'
miRNA:   3'- uGCCU--------GCGGCu-GUCGGGcUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 75044 0.72 0.355545
Target:  5'- -gGGACGCaCGACGGagggcgggggagaCCGGGCGGcGACg -3'
miRNA:   3'- ugCCUGCG-GCUGUCg------------GGCUCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 155 0.72 0.365864
Target:  5'- -gGGGCGCCGGCGgaggagcgcGCgCCGGGaGGGACg -3'
miRNA:   3'- ugCCUGCGGCUGU---------CG-GGCUCgCCCUG- -5'
9046 5' -63 NC_002512.2 + 148446 0.72 0.365864
Target:  5'- gACGGGgGCCG--GGCCCcccGCGGGACg -3'
miRNA:   3'- -UGCCUgCGGCugUCGGGcu-CGCCCUG- -5'
9046 5' -63 NC_002512.2 + 229558 0.72 0.365864
Target:  5'- -gGGGCGCCGGCGgaggagcgcGCgCCGGGaGGGACg -3'
miRNA:   3'- ugCCUGCGGCUGU---------CG-GGCUCgCCCUG- -5'
9046 5' -63 NC_002512.2 + 72812 0.72 0.365864
Target:  5'- gUGGGCGCCGGCGacCCCGGacccCGGGACg -3'
miRNA:   3'- uGCCUGCGGCUGUc-GGGCUc---GCCCUG- -5'
9046 5' -63 NC_002512.2 + 72161 0.72 0.372606
Target:  5'- gAUGGACGCCGacuucuucacguaGCAGCCCGccgaggcgaaGGCGcGGAa -3'
miRNA:   3'- -UGCCUGCGGC-------------UGUCGGGC----------UCGC-CCUg -5'
9046 5' -63 NC_002512.2 + 79994 0.72 0.373361
Target:  5'- cGCGGAgGUccaggcagCGGCAGCCgGAGCcGGACg -3'
miRNA:   3'- -UGCCUgCG--------GCUGUCGGgCUCGcCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.