Results 1 - 20 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9051 | 3' | -54.9 | NC_002512.2 | + | 221255 | 0.66 | 0.97699 |
Target: 5'- -gCCGCGGCggaaGUCGGGGgacgCGGGgCGc -3' miRNA: 3'- aaGGCGUUGaug-CAGCUCCa---GCUC-GC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 217890 | 0.67 | 0.955671 |
Target: 5'- aUCgGCGGCcGCGUCG---UCGAGCGg -3' miRNA: 3'- aAGgCGUUGaUGCAGCuccAGCUCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 157108 | 0.67 | 0.955671 |
Target: 5'- gUCCcgGCGACgucccucccgGCGUCgGGGGUCG-GCGg -3' miRNA: 3'- aAGG--CGUUGa---------UGCAG-CUCCAGCuCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 145319 | 1.06 | 0.009542 |
Target: 5'- cUUCCGCAACUACGUCGAGGUCGAGCGc -3' miRNA: 3'- -AAGGCGUUGAUGCAGCUCCAGCUCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 189857 | 0.66 | 0.974532 |
Target: 5'- gUCCGCAACcuCGUCGcGcGUCGgagacGGCGg -3' miRNA: 3'- aAGGCGUUGauGCAGCuC-CAGC-----UCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 156719 | 0.66 | 0.974532 |
Target: 5'- gUCCGCAGCUGgucucgucCGUCGucuGGUacuucaaccgcaUGGGCGu -3' miRNA: 3'- aAGGCGUUGAU--------GCAGCu--CCA------------GCUCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 199985 | 0.66 | 0.971887 |
Target: 5'- gUCCGC-GCgccCGgCGGGGaCGAGCGg -3' miRNA: 3'- aAGGCGuUGau-GCaGCUCCaGCUCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 184975 | 0.66 | 0.971887 |
Target: 5'- gUCCGCcGCgcggcCGUCGAcGUgGAGCGc -3' miRNA: 3'- aAGGCGuUGau---GCAGCUcCAgCUCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 191450 | 0.66 | 0.966016 |
Target: 5'- cUCCGCccgggGCGUUGAGGUgggcCGAGUa -3' miRNA: 3'- aAGGCGuuga-UGCAGCUCCA----GCUCGc -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 219312 | 0.67 | 0.959331 |
Target: 5'- gUCCGCGGCcACGgggaGAGcGUCG-GCGu -3' miRNA: 3'- aAGGCGUUGaUGCag--CUC-CAGCuCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 99494 | 0.67 | 0.962778 |
Target: 5'- aUCCGCAAg-GCGUgccagaCGGGGUUG-GCGg -3' miRNA: 3'- aAGGCGUUgaUGCA------GCUCCAGCuCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 159339 | 0.66 | 0.969051 |
Target: 5'- -cCCGCccgucCUuuauguaucgGCGUCGGGGUCgGGGCGu -3' miRNA: 3'- aaGGCGuu---GA----------UGCAGCUCCAG-CUCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 170793 | 0.66 | 0.97699 |
Target: 5'- --gCGCGACgacgGCGgCGAGGg-GAGCGa -3' miRNA: 3'- aagGCGUUGa---UGCaGCUCCagCUCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 228191 | 0.67 | 0.962778 |
Target: 5'- gUCCGgGAgacCUACuucgaggccgcgGUCGAGGcCGGGCGa -3' miRNA: 3'- aAGGCgUU---GAUG------------CAGCUCCaGCUCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 119765 | 0.66 | 0.97699 |
Target: 5'- ---aGCGAC-GCGUCGcGGUCGAcgGCGg -3' miRNA: 3'- aaggCGUUGaUGCAGCuCCAGCU--CGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 182080 | 0.66 | 0.971887 |
Target: 5'- -gCCGCGGCUc---CGGGGUCuGGGCGa -3' miRNA: 3'- aaGGCGUUGAugcaGCUCCAG-CUCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 223762 | 0.67 | 0.959331 |
Target: 5'- gUCCGaCGACa--G-CGAGGUCGAGgGa -3' miRNA: 3'- aAGGC-GUUGaugCaGCUCCAGCUCgC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 204873 | 0.67 | 0.955671 |
Target: 5'- gUCCGCGACcgACGgCGAgcucucggacGG-CGAGCGg -3' miRNA: 3'- aAGGCGUUGa-UGCaGCU----------CCaGCUCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 73110 | 0.66 | 0.97699 |
Target: 5'- ---gGCGACgaaaACGUCaGGGGUCGuGCGc -3' miRNA: 3'- aaggCGUUGa---UGCAG-CUCCAGCuCGC- -5' |
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9051 | 3' | -54.9 | NC_002512.2 | + | 6794 | 0.66 | 0.974276 |
Target: 5'- aUCUGUAACUGcCGUCucGGUcaaccgccuucucCGAGCGg -3' miRNA: 3'- aAGGCGUUGAU-GCAGcuCCA-------------GCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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