miRNA display CGI


Results 1 - 20 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 90924 0.66 0.8534
Target:  5'- cCGCGaaCGgggCCGGCG-CGGCCGcCGCc -3'
miRNA:   3'- -GUGCaaGCag-GGCUGCgGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 82091 0.66 0.8534
Target:  5'- cCACGggCGcgcguaagcuuuUUCCGAgcCGCgagucgggaCGGCCGCGCu -3'
miRNA:   3'- -GUGCaaGC------------AGGGCU--GCG---------GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 20257 0.66 0.8534
Target:  5'- -cCGUcgUCGUCCU--CGuCCGGCCGCa- -3'
miRNA:   3'- guGCA--AGCAGGGcuGC-GGCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 108491 0.66 0.8534
Target:  5'- gACGgUCGUCaagggCGAgGCCGGgCCcgGCGCc -3'
miRNA:   3'- gUGCaAGCAGg----GCUgCGGCC-GG--CGCG- -5'
9060 5' -60.9 NC_002512.2 + 17481 0.66 0.8534
Target:  5'- cCGCccgUCGUCCU--CGUCGGCCGCc- -3'
miRNA:   3'- -GUGca-AGCAGGGcuGCGGCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 96447 0.66 0.8534
Target:  5'- uGCGccacCGUCCCccggaaccaaACGCgCGGaCCGCGCg -3'
miRNA:   3'- gUGCaa--GCAGGGc---------UGCG-GCC-GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 177562 0.66 0.8534
Target:  5'- uCugGUUCGgggCCGuCGCCaGGauGCGCg -3'
miRNA:   3'- -GugCAAGCag-GGCuGCGG-CCggCGCG- -5'
9060 5' -60.9 NC_002512.2 + 107974 0.66 0.8534
Target:  5'- cCGCc-UCGUCCCGcuCGCUccCCGCGCg -3'
miRNA:   3'- -GUGcaAGCAGGGCu-GCGGccGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 155238 0.66 0.8534
Target:  5'- cCGCGgcCGUCCCGcccgucgcgGCGUcgaCGGCuCGCGg -3'
miRNA:   3'- -GUGCaaGCAGGGC---------UGCG---GCCG-GCGCg -5'
9060 5' -60.9 NC_002512.2 + 96093 0.66 0.8534
Target:  5'- gCGCGaccgUCGUcCCCGcCGCCG-CCGuCGUc -3'
miRNA:   3'- -GUGCa---AGCA-GGGCuGCGGCcGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 38851 0.66 0.8534
Target:  5'- cCACGUgcgccgCGcCCCGccuCGCaggcaccuCGGuCCGCGCg -3'
miRNA:   3'- -GUGCAa-----GCaGGGCu--GCG--------GCC-GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 213001 0.66 0.8534
Target:  5'- cCGCGgccgUCGggcccggggcccUCUCGAggugcgucCGCCGGCUGCGg -3'
miRNA:   3'- -GUGCa---AGC------------AGGGCU--------GCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 8210 0.66 0.8534
Target:  5'- gGCGgguguccgCGUCCCaGACGuaGGCCucgagcgucGCGCc -3'
miRNA:   3'- gUGCaa------GCAGGG-CUGCggCCGG---------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 113191 0.66 0.8534
Target:  5'- uGCGUU-GUUCCagagcGGCGUCGGCCaGCGg -3'
miRNA:   3'- gUGCAAgCAGGG-----CUGCGGCCGG-CGCg -5'
9060 5' -60.9 NC_002512.2 + 112840 0.66 0.8534
Target:  5'- gCACGaaCGgcagcagCCCGAacaGCUcgauGGCCGCGUc -3'
miRNA:   3'- -GUGCaaGCa------GGGCUg--CGG----CCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 88149 0.66 0.8534
Target:  5'- gACGaucCG-CCCGugGCCG-UCGUGCg -3'
miRNA:   3'- gUGCaa-GCaGGGCugCGGCcGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 101189 0.66 0.8534
Target:  5'- gAUGgugUUGUCCgaGACGCCGGCguuCGCc -3'
miRNA:   3'- gUGCa--AGCAGGg-CUGCGGCCGgc-GCG- -5'
9060 5' -60.9 NC_002512.2 + 93362 0.66 0.852673
Target:  5'- aGCGUgcaGUCCCGGgaggggaucgggcCGCaGGgCGCGCc -3'
miRNA:   3'- gUGCAag-CAGGGCU-------------GCGgCCgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 5748 0.66 0.852673
Target:  5'- aCGCGUcCGccUCCCGGCGCggguccaCGGCCGa-- -3'
miRNA:   3'- -GUGCAaGC--AGGGCUGCG-------GCCGGCgcg -5'
9060 5' -60.9 NC_002512.2 + 95205 0.66 0.852673
Target:  5'- gGCGagCG-CCCGcuggugacggaucGCGUCGGCCcCGCa -3'
miRNA:   3'- gUGCaaGCaGGGC-------------UGCGGCCGGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.