miRNA display CGI


Results 1 - 20 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 1655 0.68 0.73767
Target:  5'- gCACGUUCGcccuUCCCGccgucuCGcCCGGCCucgacCGCg -3'
miRNA:   3'- -GUGCAAGC----AGGGCu-----GC-GGCCGGc----GCG- -5'
9060 5' -60.9 NC_002512.2 + 1848 0.68 0.728579
Target:  5'- cCGCGggCGUCUCGcCGCCGuCCGguCGCc -3'
miRNA:   3'- -GUGCaaGCAGGGCuGCGGCcGGC--GCG- -5'
9060 5' -60.9 NC_002512.2 + 2202 0.79 0.216463
Target:  5'- -cCGUcgUCGUCUCGGuCGCCGGCgGCGCc -3'
miRNA:   3'- guGCA--AGCAGGGCU-GCGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 2509 0.68 0.746683
Target:  5'- aACGgaucUCc-CCCGACGCCGGCgGCc- -3'
miRNA:   3'- gUGCa---AGcaGGGCUGCGGCCGgCGcg -5'
9060 5' -60.9 NC_002512.2 + 2637 0.72 0.486729
Target:  5'- -uCGcUCGUCCUGAUGCCcgcccguccGCCGCGCc -3'
miRNA:   3'- guGCaAGCAGGGCUGCGGc--------CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 2806 0.68 0.728579
Target:  5'- gGCGgccggCGggaCCCGGCGCgGGCgCGgGCc -3'
miRNA:   3'- gUGCaa---GCa--GGGCUGCGgCCG-GCgCG- -5'
9060 5' -60.9 NC_002512.2 + 3175 0.7 0.634917
Target:  5'- cCGCGgccucccgUCG-CUCGACGCCG-CCGCGg -3'
miRNA:   3'- -GUGCa-------AGCaGGGCUGCGGCcGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 3494 0.67 0.79869
Target:  5'- gACGg--GUCCCGGCGCCGucGUCG-GCc -3'
miRNA:   3'- gUGCaagCAGGGCUGCGGC--CGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 5079 0.77 0.282812
Target:  5'- gGCGUuggucgUCGUCgCCGGCGUCGGCgCGgGCg -3'
miRNA:   3'- gUGCA------AGCAG-GGCUGCGGCCG-GCgCG- -5'
9060 5' -60.9 NC_002512.2 + 5748 0.66 0.852673
Target:  5'- aCGCGUcCGccUCCCGGCGCggguccaCGGCCGa-- -3'
miRNA:   3'- -GUGCAaGC--AGGGCUGCG-------GCCGGCgcg -5'
9060 5' -60.9 NC_002512.2 + 6071 0.68 0.710188
Target:  5'- aCGCGccgucgUCGUCCCGGCGgUcGCCGC-Cg -3'
miRNA:   3'- -GUGCa-----AGCAGGGCUGCgGcCGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 7228 0.68 0.719415
Target:  5'- gGCGccccUCGgCCCG--GCCGGCCGuCGCg -3'
miRNA:   3'- gUGCa---AGCaGGGCugCGGCCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 7690 0.7 0.615947
Target:  5'- gACGaagaaaCGga-CGACGCCGGCCGCGg -3'
miRNA:   3'- gUGCaa----GCaggGCUGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 8210 0.66 0.8534
Target:  5'- gGCGgguguccgCGUCCCaGACGuaGGCCucgagcgucGCGCc -3'
miRNA:   3'- gUGCaa------GCAGGG-CUGCggCCGG---------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 8693 0.71 0.567871
Target:  5'- gUACGUacUCGggUCCCGuCcacuccgaggucgGUCGGCCGCGCg -3'
miRNA:   3'- -GUGCA--AGC--AGGGCuG-------------CGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 9121 0.67 0.790304
Target:  5'- cCAUGga---CCCGACGUCGGCCucgacggcccaGCGCu -3'
miRNA:   3'- -GUGCaagcaGGGCUGCGGCCGG-----------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 9451 0.66 0.846055
Target:  5'- cCACGUagaGcUCCGGCgGCUGGCCGUagGCg -3'
miRNA:   3'- -GUGCAag-CaGGGCUG-CGGCCGGCG--CG- -5'
9060 5' -60.9 NC_002512.2 + 10000 0.68 0.719415
Target:  5'- gGCGgucggcUCGUCuCCGACcCCGGCCuCGUc -3'
miRNA:   3'- gUGCa-----AGCAG-GGCUGcGGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 10090 0.72 0.522613
Target:  5'- gCGCGUccccuaucugUGUcCCCGGCcggGCCGGCCGCGg -3'
miRNA:   3'- -GUGCAa---------GCA-GGGCUG---CGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 12546 0.71 0.540937
Target:  5'- -uCGUgCGUCCCGAugcCGCCGuaCGUGCu -3'
miRNA:   3'- guGCAaGCAGGGCU---GCGGCcgGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.