miRNA display CGI


Results 1 - 20 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 227894 0.69 0.653879
Target:  5'- aCGCGggCGagUCCGAgGCCGGagacggaCGCGCc -3'
miRNA:   3'- -GUGCaaGCa-GGGCUgCGGCCg------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 227769 0.66 0.846055
Target:  5'- aACGcUCGacgCCCG-CGaCCGaGCCGCGg -3'
miRNA:   3'- gUGCaAGCa--GGGCuGC-GGC-CGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 227081 0.7 0.597019
Target:  5'- cCGCGccggGUCCCGccggcCGCCGGCCGgGUc -3'
miRNA:   3'- -GUGCaag-CAGGGCu----GCGGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 225766 0.67 0.773173
Target:  5'- aCAUGggauccaUCuGuUCCCGaggcuGCGCCGGCCGgGCc -3'
miRNA:   3'- -GUGCa------AG-C-AGGGC-----UGCGGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 225426 0.67 0.755609
Target:  5'- uCGgGUUgGggCCGACGCCGacccCCGCGCc -3'
miRNA:   3'- -GUgCAAgCagGGCUGCGGCc---GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 225031 0.66 0.815066
Target:  5'- gCACGcggCGaacCCCG-CGauGGCCGCGCu -3'
miRNA:   3'- -GUGCaa-GCa--GGGCuGCggCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 224874 0.7 0.587585
Target:  5'- cCugGUU--UCCCGccuCGCCGGCCGCc- -3'
miRNA:   3'- -GugCAAgcAGGGCu--GCGGCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 224334 0.66 0.838543
Target:  5'- -cUGUUUuUCCgCGGCGCCGcGCCGggguCGCg -3'
miRNA:   3'- guGCAAGcAGG-GCUGCGGC-CGGC----GCG- -5'
9060 5' -60.9 NC_002512.2 + 223257 0.67 0.790304
Target:  5'- -uCGggCGUCCgCGuCGUCGgggggcgggacGCCGCGCg -3'
miRNA:   3'- guGCaaGCAGG-GCuGCGGC-----------CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 223212 0.67 0.790304
Target:  5'- gGCGUcccggagcgCGUCCCG--GCCGGCUcgGUGCa -3'
miRNA:   3'- gUGCAa--------GCAGGGCugCGGCCGG--CGCG- -5'
9060 5' -60.9 NC_002512.2 + 222636 0.67 0.773173
Target:  5'- gACGgaCGccgcuccgCCgCGACgGCCGGCCGgGCc -3'
miRNA:   3'- gUGCaaGCa-------GG-GCUG-CGGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 222237 0.71 0.559472
Target:  5'- cCGCGUccuUCGUCgCCGugGCgggucucgugaUGGCCuGCGCc -3'
miRNA:   3'- -GUGCA---AGCAG-GGCugCG-----------GCCGG-CGCG- -5'
9060 5' -60.9 NC_002512.2 + 222171 0.67 0.79869
Target:  5'- -------aUCCCGACGCCuacucccgGGCCGCGg -3'
miRNA:   3'- gugcaagcAGGGCUGCGG--------CCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 221482 0.66 0.846055
Target:  5'- gCGCGU---UCCUGGCGCuCGGCguccuauuuuccUGCGCg -3'
miRNA:   3'- -GUGCAagcAGGGCUGCG-GCCG------------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 221457 0.68 0.728579
Target:  5'- gCGCGgUCGU-CCGA--CCGGCCGCGg -3'
miRNA:   3'- -GUGCaAGCAgGGCUgcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 221145 0.67 0.755609
Target:  5'- cCGCGUcccCGUCgUCGACggGCgGGCgCGCGCg -3'
miRNA:   3'- -GUGCAa--GCAG-GGCUG--CGgCCG-GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 220816 0.77 0.253381
Target:  5'- -uCGUg-GUCCCGcCGCUGGCCGUGCu -3'
miRNA:   3'- guGCAagCAGGGCuGCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 220641 0.7 0.638711
Target:  5'- gACG-UCGUCCUGugGCgCGagcgccaccuggcccGCCGCGUc -3'
miRNA:   3'- gUGCaAGCAGGGCugCG-GC---------------CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 220345 0.7 0.634917
Target:  5'- gACGgccUCGUCaacgCCGugGCCguGGCCGcCGCc -3'
miRNA:   3'- gUGCa--AGCAG----GGCugCGG--CCGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 219518 0.68 0.728579
Target:  5'- gGCGUUCGgcaccCCCGucuuCGUCGG-CGUGCc -3'
miRNA:   3'- gUGCAAGCa----GGGCu---GCGGCCgGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.