miRNA display CGI


Results 1 - 20 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 103108 0.73 0.460599
Target:  5'- gCGCGgcacgCGUCgCCGcCGCC-GCCGCGCc -3'
miRNA:   3'- -GUGCaa---GCAG-GGCuGCGGcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 116216 0.74 0.4027
Target:  5'- aACGUcCGaCCCGcgcgcacccucGCgGCCGGCCGCGCc -3'
miRNA:   3'- gUGCAaGCaGGGC-----------UG-CGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 83975 0.74 0.418773
Target:  5'- gGCGgaUG-CCCGGCGCggggCGGUCGCGCa -3'
miRNA:   3'- gUGCaaGCaGGGCUGCG----GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 45413 0.73 0.426954
Target:  5'- uGCGggCGcUCgacggCGGCGCCGGCCGCGg -3'
miRNA:   3'- gUGCaaGC-AGg----GCUGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 89364 0.73 0.43523
Target:  5'- gGCGgcCGUCCUGGCGCCGuaCGUGg -3'
miRNA:   3'- gUGCaaGCAGGGCUGCGGCcgGCGCg -5'
9060 5' -60.9 NC_002512.2 + 141745 0.73 0.43523
Target:  5'- cCACGggcggaUCGUCCCcuacaucCGCCGcGCCGUGCa -3'
miRNA:   3'- -GUGCa-----AGCAGGGcu-----GCGGC-CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 18127 0.73 0.43523
Target:  5'- cCACG-UCcUCCCGcaGCGCCcgGGCCGCGUc -3'
miRNA:   3'- -GUGCaAGcAGGGC--UGCGG--CCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 50021 0.73 0.443597
Target:  5'- gCACG-UCGUCgUGACGgUGGgCGCGCa -3'
miRNA:   3'- -GUGCaAGCAGgGCUGCgGCCgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 73350 0.73 0.452054
Target:  5'- uCGCGUacaCGuUCCCGcCGCCGGacccCCGCGCc -3'
miRNA:   3'- -GUGCAa--GC-AGGGCuGCGGCC----GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 103443 0.74 0.4027
Target:  5'- gGCGgcCGcCgCCGuCGCCGGCCGgGCg -3'
miRNA:   3'- gUGCaaGCaG-GGCuGCGGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 101609 0.75 0.371754
Target:  5'- gGCGgccgUCGgCCCGGCGCCGGgaCGCGa -3'
miRNA:   3'- gUGCa---AGCaGGGCUGCGGCCg-GCGCg -5'
9060 5' -60.9 NC_002512.2 + 100363 0.75 0.3695
Target:  5'- gCACGgcgUCGUCCUGuACGCggcucccgacuuccCGGCCGCGg -3'
miRNA:   3'- -GUGCa--AGCAGGGC-UGCG--------------GCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 2202 0.79 0.216463
Target:  5'- -cCGUcgUCGUCUCGGuCGCCGGCgGCGCc -3'
miRNA:   3'- guGCA--AGCAGGGCU-GCGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 50445 0.78 0.247806
Target:  5'- -cCGgaUGUCCagaaGACGCCGGCCGCGa -3'
miRNA:   3'- guGCaaGCAGGg---CUGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 29890 0.77 0.252819
Target:  5'- gCACGUgggccgcUCGUCCC--CGCCGGgCGCGCg -3'
miRNA:   3'- -GUGCA-------AGCAGGGcuGCGGCCgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 5079 0.77 0.282812
Target:  5'- gGCGUuggucgUCGUCgCCGGCGUCGGCgCGgGCg -3'
miRNA:   3'- gUGCA------AGCAG-GGCUGCGGCCG-GCgCG- -5'
9060 5' -60.9 NC_002512.2 + 130749 0.77 0.289013
Target:  5'- -cCGUUCc-CCCGACGauCCGGCCGUGCg -3'
miRNA:   3'- guGCAAGcaGGGCUGC--GGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 68176 0.76 0.32162
Target:  5'- -----aCGaUCCCGuCGCCGGCCGCGUc -3'
miRNA:   3'- gugcaaGC-AGGGCuGCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 57232 0.75 0.349632
Target:  5'- aCGCGggCGUCCC--CGCaGGCCGCGUa -3'
miRNA:   3'- -GUGCaaGCAGGGcuGCGgCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 29214 0.75 0.349632
Target:  5'- aCACcUUCuaCCCGaACGCCGGCCGCGg -3'
miRNA:   3'- -GUGcAAGcaGGGC-UGCGGCCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.