miRNA display CGI


Results 1 - 20 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 213001 0.66 0.8534
Target:  5'- cCGCGgccgUCGggcccggggcccUCUCGAggugcgucCGCCGGCUGCGg -3'
miRNA:   3'- -GUGCa---AGC------------AGGGCU--------GCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 224334 0.66 0.838543
Target:  5'- -cUGUUUuUCCgCGGCGCCGcGCCGggguCGCg -3'
miRNA:   3'- guGCAAGcAGG-GCUGCGGC-CGGC----GCG- -5'
9060 5' -60.9 NC_002512.2 + 145906 0.66 0.838543
Target:  5'- gCGCGacCGcCCCG-CGCCGGgcauCCGcCGCc -3'
miRNA:   3'- -GUGCaaGCaGGGCuGCGGCC----GGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 141271 1.11 0.001515
Target:  5'- cCACGUUCGUCCCGACGCCGGCCGCGCg -3'
miRNA:   3'- -GUGCAAGCAGGGCUGCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 107974 0.66 0.8534
Target:  5'- cCGCc-UCGUCCCGcuCGCUccCCGCGCg -3'
miRNA:   3'- -GUGcaAGCAGGGCu-GCGGccGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 96093 0.66 0.8534
Target:  5'- gCGCGaccgUCGUcCCCGcCGCCG-CCGuCGUc -3'
miRNA:   3'- -GUGCa---AGCA-GGGCuGCGGCcGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 88149 0.66 0.8534
Target:  5'- gACGaucCG-CCCGugGCCG-UCGUGCg -3'
miRNA:   3'- gUGCaa-GCaGGGCugCGGCcGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 95205 0.66 0.852673
Target:  5'- gGCGagCG-CCCGcuggugacggaucGCGUCGGCCcCGCa -3'
miRNA:   3'- gUGCaaGCaGGGC-------------UGCGGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 221482 0.66 0.846055
Target:  5'- gCGCGU---UCCUGGCGCuCGGCguccuauuuuccUGCGCg -3'
miRNA:   3'- -GUGCAagcAGGGCUGCG-GCCG------------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 87986 0.66 0.843819
Target:  5'- cCGCGg-CGcCCCGACG-CGGagauuuauauagacCCGCGCg -3'
miRNA:   3'- -GUGCaaGCaGGGCUGCgGCC--------------GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 179438 0.66 0.846055
Target:  5'- uCGCGgccggCGUCuucuggacauCCGGCGCCGGCCu--- -3'
miRNA:   3'- -GUGCaa---GCAG----------GGCUGCGGCCGGcgcg -5'
9060 5' -60.9 NC_002512.2 + 227769 0.66 0.846055
Target:  5'- aACGcUCGacgCCCG-CGaCCGaGCCGCGg -3'
miRNA:   3'- gUGCaAGCa--GGGCuGC-GGC-CGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 82091 0.66 0.8534
Target:  5'- cCACGggCGcgcguaagcuuuUUCCGAgcCGCgagucgggaCGGCCGCGCu -3'
miRNA:   3'- -GUGCaaGC------------AGGGCU--GCG---------GCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 92564 0.66 0.846055
Target:  5'- gACG-UCGgaggCgCCGACGCCgcGGCCGgGa -3'
miRNA:   3'- gUGCaAGCa---G-GGCUGCGG--CCGGCgCg -5'
9060 5' -60.9 NC_002512.2 + 177562 0.66 0.8534
Target:  5'- uCugGUUCGgggCCGuCGCCaGGauGCGCg -3'
miRNA:   3'- -GugCAAGCag-GGCuGCGG-CCggCGCG- -5'
9060 5' -60.9 NC_002512.2 + 146088 0.66 0.849013
Target:  5'- -cCGgcgCG-CCCGACGCgguccucggcggcggCGGCgGCGCc -3'
miRNA:   3'- guGCaa-GCaGGGCUGCG---------------GCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 123634 0.66 0.846055
Target:  5'- gACGg--GUCCCGgggagagcGCGCCGcgguucCCGCGCg -3'
miRNA:   3'- gUGCaagCAGGGC--------UGCGGCc-----GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 184682 0.66 0.838543
Target:  5'- gGCGgcCGUCCgCGcCGCCGGUCcCGg -3'
miRNA:   3'- gUGCaaGCAGG-GCuGCGGCCGGcGCg -5'
9060 5' -60.9 NC_002512.2 + 108491 0.66 0.8534
Target:  5'- gACGgUCGUCaagggCGAgGCCGGgCCcgGCGCc -3'
miRNA:   3'- gUGCaAGCAGg----GCUgCGGCC-GG--CGCG- -5'
9060 5' -60.9 NC_002512.2 + 96447 0.66 0.8534
Target:  5'- uGCGccacCGUCCCccggaaccaaACGCgCGGaCCGCGCg -3'
miRNA:   3'- gUGCaa--GCAGGGc---------UGCG-GCC-GGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.