Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9073 | 5' | -60.9 | NC_002512.2 | + | 193321 | 0.68 | 0.704348 |
Target: 5'- --cGC-CGC-UUCGGCGCGUucaUCUGCGg -3' miRNA: 3'- ccaCGuGCGcAAGCCGCGCG---GGACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 221478 | 0.67 | 0.731295 |
Target: 5'- cGGUGCGCguuccugGCGcUCGGCGUccuauuuUCCUGCGc -3' miRNA: 3'- -CCACGUG-------CGCaAGCCGCGc------GGGACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 136586 | 0.67 | 0.732214 |
Target: 5'- cGGUGCgcggguuggACGCGUacagguagCGGgcCGCGCCCUccaGCGu -3' miRNA: 3'- -CCACG---------UGCGCAa-------GCC--GCGCGGGA---CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 54613 | 0.67 | 0.735883 |
Target: 5'- cGUGUACGCGgcCGccagcuacccgccgaGCGCGgCCCUGgCGa -3' miRNA: 3'- cCACGUGCGCaaGC---------------CGCGC-GGGAC-GC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 125207 | 0.67 | 0.738626 |
Target: 5'- cGGUcGCGCGUGUcgucgUCGGUccggucuuuauuucGCGCCCUcguucGCGc -3' miRNA: 3'- -CCA-CGUGCGCA-----AGCCG--------------CGCGGGA-----CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 101584 | 0.67 | 0.741361 |
Target: 5'- aGGUGC-CGCGacUCgGGCGUGCaCCcGCa -3' miRNA: 3'- -CCACGuGCGCa-AG-CCGCGCG-GGaCGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 80814 | 0.67 | 0.741361 |
Target: 5'- --cGCGCGCGccUCGGCGUcggcggagggGCCCcguagGCGa -3' miRNA: 3'- ccaCGUGCGCa-AGCCGCG----------CGGGa----CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 124644 | 0.67 | 0.741361 |
Target: 5'- gGGUGCGCG-GcgCGGCGCucacgcuguacGCCUUcGCGc -3' miRNA: 3'- -CCACGUGCgCaaGCCGCG-----------CGGGA-CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 99617 | 0.67 | 0.741361 |
Target: 5'- cGUGUACGUGaugcCGGC-CGCCCUGa- -3' miRNA: 3'- cCACGUGCGCaa--GCCGcGCGGGACgc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 90098 | 0.67 | 0.750424 |
Target: 5'- cGUGUGCGUGUaugucuucuggaUCGcGgGCGCCCggUGCGc -3' miRNA: 3'- cCACGUGCGCA------------AGC-CgCGCGGG--ACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 22949 | 0.67 | 0.759397 |
Target: 5'- aGG-GCACGCGg-CGGUGUGCCa-GCc -3' miRNA: 3'- -CCaCGUGCGCaaGCCGCGCGGgaCGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 186987 | 0.67 | 0.76827 |
Target: 5'- cGGUGCGCaUGggcuacgCGGCGgGCCUguacGCGg -3' miRNA: 3'- -CCACGUGcGCaa-----GCCGCgCGGGa---CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 200837 | 0.67 | 0.76827 |
Target: 5'- aGGUcaGCGgGgGcgCGGCGCGUCuCUGCc -3' miRNA: 3'- -CCA--CGUgCgCaaGCCGCGCGG-GACGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 125012 | 0.67 | 0.76827 |
Target: 5'- cGU-CGCGCcgUCGGCGcCGCCCgcUGCGc -3' miRNA: 3'- cCAcGUGCGcaAGCCGC-GCGGG--ACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 121076 | 0.67 | 0.76827 |
Target: 5'- --cGCACGCcucgCGGaacaGCGCCCgcaGCGg -3' miRNA: 3'- ccaCGUGCGcaa-GCCg---CGCGGGa--CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 135092 | 0.67 | 0.76827 |
Target: 5'- --cGCGucuacCGCG-UCGuGCGCGCCCUGg- -3' miRNA: 3'- ccaCGU-----GCGCaAGC-CGCGCGGGACgc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 137096 | 0.67 | 0.76827 |
Target: 5'- cGGUGUGCGCcca-GGCGCGCggggUGCGa -3' miRNA: 3'- -CCACGUGCGcaagCCGCGCGgg--ACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 77468 | 0.67 | 0.76827 |
Target: 5'- cGGUGUGCGCaaugacgCaGCGauCGCCCUGUGg -3' miRNA: 3'- -CCACGUGCGcaa----GcCGC--GCGGGACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 11013 | 0.67 | 0.76827 |
Target: 5'- aGG-GCGCGCacggcgUCGGUGC-CCCggGCGa -3' miRNA: 3'- -CCaCGUGCGca----AGCCGCGcGGGa-CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 161509 | 0.67 | 0.76827 |
Target: 5'- uGGUGCgcuGCGCGgaCGGCacCGCCgaGCc -3' miRNA: 3'- -CCACG---UGCGCaaGCCGc-GCGGgaCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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