Results 41 - 60 of 327 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9085 | 3' | -64 | NC_002512.2 | + | 116713 | 0.73 | 0.288295 |
Target: 5'- cGGCGAcGCCGgucgcgucCCGCCCGGCCG-CGGc -3' miRNA: 3'- uUCGCU-CGGC--------GGCGGGCUGGCuGCCu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 74627 | 0.73 | 0.294574 |
Target: 5'- -cGCGAGaCCGCCGCgCGAcggcCCGGgGGAg -3' miRNA: 3'- uuCGCUC-GGCGGCGgGCU----GGCUgCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 188661 | 0.73 | 0.294574 |
Target: 5'- cGGCGGcCCGUCGUCCGACCGcgGCGGu -3' miRNA: 3'- uUCGCUcGGCGGCGGGCUGGC--UGCCu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 129196 | 0.73 | 0.300958 |
Target: 5'- -uGCGgaggaGGCCGCCGCCgcUGGCCG-CGGAg -3' miRNA: 3'- uuCGC-----UCGGCGGCGG--GCUGGCuGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 110531 | 0.73 | 0.300958 |
Target: 5'- cGAGCGAGUCGCCGU--GACCGGCGu- -3' miRNA: 3'- -UUCGCUCGGCGGCGggCUGGCUGCcu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 205038 | 0.72 | 0.307449 |
Target: 5'- -cGCGuccGCCGCCGaCCGGCCG-CGGGc -3' miRNA: 3'- uuCGCu--CGGCGGCgGGCUGGCuGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 133657 | 0.72 | 0.307449 |
Target: 5'- gGGGCGGucgccGCCGCCGCCgCGGCCGcCGuGGc -3' miRNA: 3'- -UUCGCU-----CGGCGGCGG-GCUGGCuGC-CU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 204965 | 0.72 | 0.314046 |
Target: 5'- -uGCGGGCCGa-GCCCGACgccgcgggCGACGGGg -3' miRNA: 3'- uuCGCUCGGCggCGGGCUG--------GCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 92682 | 0.72 | 0.32075 |
Target: 5'- -cGcCGGGCgCGCCGCCC-ACCGgGCGGAc -3' miRNA: 3'- uuC-GCUCG-GCGGCGGGcUGGC-UGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 154694 | 0.72 | 0.32756 |
Target: 5'- --cCGAGCgGCCGUCCGGCgucgagcggcgCGACGGAa -3' miRNA: 3'- uucGCUCGgCGGCGGGCUG-----------GCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 162006 | 0.72 | 0.32756 |
Target: 5'- -uGCGGgauGCgGaCCGCCUGGCCGACGGc -3' miRNA: 3'- uuCGCU---CGgC-GGCGGGCUGGCUGCCu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 76541 | 0.72 | 0.32756 |
Target: 5'- cAGCGGGacCCGCCGaCCCgGACCGgcccaGCGGAa -3' miRNA: 3'- uUCGCUC--GGCGGC-GGG-CUGGC-----UGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 101751 | 0.72 | 0.32756 |
Target: 5'- gAAGaCcAGCCGCCGCCUGACCuucggcgaGACGGc -3' miRNA: 3'- -UUC-GcUCGGCGGCGGGCUGG--------CUGCCu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 184360 | 0.72 | 0.334477 |
Target: 5'- cAAGuCGccGCCGCCGCCCG-CCG-CGGGc -3' miRNA: 3'- -UUC-GCu-CGGCGGCGGGCuGGCuGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 122792 | 0.72 | 0.339382 |
Target: 5'- gAGGaCGGGCCGCCGaccgaCCCGACCgcccccgagaacgaGAUGGAg -3' miRNA: 3'- -UUC-GCUCGGCGGC-----GGGCUGG--------------CUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 196693 | 0.72 | 0.3415 |
Target: 5'- cGAGCGGcaccGuCCGCCaGCCCGACCGGCu-- -3' miRNA: 3'- -UUCGCU----C-GGCGG-CGGGCUGGCUGccu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 41110 | 0.72 | 0.3415 |
Target: 5'- gAGGCcgGAGCCGCCGCCgGaACCGcccuUGGAc -3' miRNA: 3'- -UUCG--CUCGGCGGCGGgC-UGGCu---GCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 29237 | 0.72 | 0.3415 |
Target: 5'- -cGCGGGUCGCgcaGUCCGuccuCCGACGGGg -3' miRNA: 3'- uuCGCUCGGCGg--CGGGCu---GGCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 137227 | 0.72 | 0.348629 |
Target: 5'- -cGCGGGCgGCCGuCCCGGauCCGcGCGGGu -3' miRNA: 3'- uuCGCUCGgCGGC-GGGCU--GGC-UGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 222558 | 0.72 | 0.348629 |
Target: 5'- cGGCGAcccgaccgucccGCCGCgGCCCG-CCGucGCGGAg -3' miRNA: 3'- uUCGCU------------CGGCGgCGGGCuGGC--UGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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