miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 3' -53.4 NC_002512.2 + 121313 1.11 0.007133
Target:  5'- gCCCCCCGAAAAAGAUCGGCACGGUGAc -3'
miRNA:   3'- -GGGGGGCUUUUUCUAGCCGUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 134009 0.87 0.212816
Target:  5'- aUCCCCCGGAcGAAGAUCuGCGCGGUGGc -3'
miRNA:   3'- -GGGGGGCUU-UUUCUAGcCGUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 47815 0.79 0.489725
Target:  5'- -aCCCCGGAGccgcggcuGAGGUCGGCGCGGcUGGc -3'
miRNA:   3'- ggGGGGCUUU--------UUCUAGCCGUGCC-ACU- -5'
9095 3' -53.4 NC_002512.2 + 164221 0.79 0.537375
Target:  5'- gCCgCCGGGAAGGGcaUCGGCAUGGUGu -3'
miRNA:   3'- gGGgGGCUUUUUCU--AGCCGUGCCACu -5'
9095 3' -53.4 NC_002512.2 + 213907 0.77 0.596472
Target:  5'- gCUCCCCGggGGAGAUCGacCGCGGcGAg -3'
miRNA:   3'- -GGGGGGCuuUUUCUAGCc-GUGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 79050 0.76 0.696155
Target:  5'- aCCCauCUCGggGAAGcgCGGCGCGGUc- -3'
miRNA:   3'- -GGG--GGGCuuUUUCuaGCCGUGCCAcu -5'
9095 3' -53.4 NC_002512.2 + 15989 0.74 0.751186
Target:  5'- cUCCCCCGggGAgcagaacacgagauAGGUCGGcCGCcgGGUGGg -3'
miRNA:   3'- -GGGGGGCuuUU--------------UCUAGCC-GUG--CCACU- -5'
9095 3' -53.4 NC_002512.2 + 14197 0.74 0.77256
Target:  5'- gUCCCCGAAccAGAagGGCAgcCGGUGAc -3'
miRNA:   3'- gGGGGGCUUuuUCUagCCGU--GCCACU- -5'
9095 3' -53.4 NC_002512.2 + 23036 0.74 0.77256
Target:  5'- gCCCCCGAAGAAGAUCGugaaGCugGaccUGAc -3'
miRNA:   3'- gGGGGGCUUUUUCUAGC----CGugCc--ACU- -5'
9095 3' -53.4 NC_002512.2 + 74059 0.74 0.77256
Target:  5'- cCCUCCCGGGAGcGGAUCuGCACGGa-- -3'
miRNA:   3'- -GGGGGGCUUUU-UCUAGcCGUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 112910 0.74 0.790634
Target:  5'- gCCCgCCCGGAcgGGGcgUCGGCGgccCGGUGGc -3'
miRNA:   3'- -GGG-GGGCUUuuUCU--AGCCGU---GCCACU- -5'
9095 3' -53.4 NC_002512.2 + 205211 0.73 0.808162
Target:  5'- cCCCgCCCGAGcggcccgggacGGAGAUCGGgACGGa-- -3'
miRNA:   3'- -GGG-GGGCUU-----------UUUCUAGCCgUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 222342 0.73 0.82508
Target:  5'- gCCUCCagGAGGAGGAggagCGGCACGGg-- -3'
miRNA:   3'- -GGGGGg-CUUUUUCUa---GCCGUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 152823 0.73 0.833291
Target:  5'- uCCCCggUCGAAAAGGAUCGGgccuCGCGGUc- -3'
miRNA:   3'- -GGGG--GGCUUUUUCUAGCC----GUGCCAcu -5'
9095 3' -53.4 NC_002512.2 + 127031 0.72 0.86432
Target:  5'- uCCCCCCGGucGGGAUaCGcGUACGGcGGc -3'
miRNA:   3'- -GGGGGGCUuuUUCUA-GC-CGUGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 157121 0.72 0.86432
Target:  5'- cCCUCCCGGcgucGGGGGUCGGCgGCGGg-- -3'
miRNA:   3'- -GGGGGGCUu---UUUCUAGCCG-UGCCacu -5'
9095 3' -53.4 NC_002512.2 + 86937 0.72 0.871592
Target:  5'- uCCUgUCGGAGGAGA-CGGCgAUGGUGAc -3'
miRNA:   3'- -GGGgGGCUUUUUCUaGCCG-UGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 190191 0.72 0.871592
Target:  5'- uCgCCCCGGcugcAGAAGGUCGGCggcGCGGUc- -3'
miRNA:   3'- -GgGGGGCU----UUUUCUAGCCG---UGCCAcu -5'
9095 3' -53.4 NC_002512.2 + 189708 0.72 0.878659
Target:  5'- aCgUCCGggGGAuGUCGGgGCGGUGGg -3'
miRNA:   3'- gGgGGGCuuUUUcUAGCCgUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 34993 0.72 0.878659
Target:  5'- gUCCCgCGGAGGAGAagGGCACcagggccaGGUGGg -3'
miRNA:   3'- -GGGGgGCUUUUUCUagCCGUG--------CCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.