miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 3' -53.4 NC_002512.2 + 125158 0.7 0.941861
Target:  5'- -gCCCCGggGgcGggCGG-ACGGUGAc -3'
miRNA:   3'- ggGGGGCuuUuuCuaGCCgUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 13675 0.71 0.904785
Target:  5'- gCUCCCGGAcGAGGcgaCGGCcgcgGCGGUGAu -3'
miRNA:   3'- gGGGGGCUUuUUCUa--GCCG----UGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 4501 0.71 0.910764
Target:  5'- gUCCCCGAAGAGGAU-GGaCGCgagGGUGGa -3'
miRNA:   3'- gGGGGGCUUUUUCUAgCC-GUG---CCACU- -5'
9095 3' -53.4 NC_002512.2 + 53271 0.7 0.916517
Target:  5'- gCCCCCGAcgggguGGAGAUCGaCACGGc-- -3'
miRNA:   3'- gGGGGGCUu-----UUUCUAGCcGUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 75421 0.7 0.932408
Target:  5'- cCUCCUCGAGGGcgggacguccGGAUCGGgGCGG-GAc -3'
miRNA:   3'- -GGGGGGCUUUU----------UCUAGCCgUGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 82276 0.7 0.937248
Target:  5'- gCCCCCGucGAGGGUCGGguCGa--- -3'
miRNA:   3'- gGGGGGCuuUUUCUAGCCguGCcacu -5'
9095 3' -53.4 NC_002512.2 + 82214 0.7 0.941861
Target:  5'- uCCUCCCGggGcGGGaagCGGgGcCGGUGAc -3'
miRNA:   3'- -GGGGGGCuuUuUCUa--GCCgU-GCCACU- -5'
9095 3' -53.4 NC_002512.2 + 54426 0.7 0.941861
Target:  5'- gCCUgCUGggGgaagaggacaggGGGAcCGGCACGGUGGc -3'
miRNA:   3'- -GGGgGGCuuU------------UUCUaGCCGUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 58662 0.7 0.941861
Target:  5'- cUCCCCCagucGAAAGAUcCGGCGCGuGuUGAa -3'
miRNA:   3'- -GGGGGGcu--UUUUCUA-GCCGUGC-C-ACU- -5'
9095 3' -53.4 NC_002512.2 + 69221 0.71 0.892157
Target:  5'- cCCCCCCGAAGuccccGUCGcCGCGGUcGAu -3'
miRNA:   3'- -GGGGGGCUUUuuc--UAGCcGUGCCA-CU- -5'
9095 3' -53.4 NC_002512.2 + 14895 0.71 0.892157
Target:  5'- gCUCCCCGAcGggcaucccGAGGUCGGCGuCGGUc- -3'
miRNA:   3'- -GGGGGGCUuU--------UUCUAGCCGU-GCCAcu -5'
9095 3' -53.4 NC_002512.2 + 38680 0.71 0.885515
Target:  5'- gCCCCCGggGAAGAcCGaGCcgACGGagGAg -3'
miRNA:   3'- gGGGGGCuuUUUCUaGC-CG--UGCCa-CU- -5'
9095 3' -53.4 NC_002512.2 + 79050 0.76 0.696155
Target:  5'- aCCCauCUCGggGAAGcgCGGCGCGGUc- -3'
miRNA:   3'- -GGG--GGGCuuUUUCuaGCCGUGCCAcu -5'
9095 3' -53.4 NC_002512.2 + 15989 0.74 0.751186
Target:  5'- cUCCCCCGggGAgcagaacacgagauAGGUCGGcCGCcgGGUGGg -3'
miRNA:   3'- -GGGGGGCuuUU--------------UCUAGCC-GUG--CCACU- -5'
9095 3' -53.4 NC_002512.2 + 14197 0.74 0.77256
Target:  5'- gUCCCCGAAccAGAagGGCAgcCGGUGAc -3'
miRNA:   3'- gGGGGGCUUuuUCUagCCGU--GCCACU- -5'
9095 3' -53.4 NC_002512.2 + 23036 0.74 0.77256
Target:  5'- gCCCCCGAAGAAGAUCGugaaGCugGaccUGAc -3'
miRNA:   3'- gGGGGGCUUUUUCUAGC----CGugCc--ACU- -5'
9095 3' -53.4 NC_002512.2 + 74059 0.74 0.77256
Target:  5'- cCCUCCCGGGAGcGGAUCuGCACGGa-- -3'
miRNA:   3'- -GGGGGGCUUUU-UCUAGcCGUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 86937 0.72 0.871592
Target:  5'- uCCUgUCGGAGGAGA-CGGCgAUGGUGAc -3'
miRNA:   3'- -GGGgGGCUUUUUCUaGCCG-UGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 34993 0.72 0.878659
Target:  5'- gUCCCgCGGAGGAGAagGGCACcagggccaGGUGGg -3'
miRNA:   3'- -GGGGgGCUUUUUCUagCCGUG--------CCACU- -5'
9095 3' -53.4 NC_002512.2 + 21022 0.72 0.881427
Target:  5'- uCCCCCCGAgugccgauuaagcgaAAAacaGGAaCGGCGCGGcgcgUGAg -3'
miRNA:   3'- -GGGGGGCU---------------UUU---UCUaGCCGUGCC----ACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.