miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 3' -53.4 NC_002512.2 + 468 0.68 0.973331
Target:  5'- gCCCCCgGggGAGGAggacCGGCccucacgACGGg-- -3'
miRNA:   3'- -GGGGGgCuuUUUCUa---GCCG-------UGCCacu -5'
9095 3' -53.4 NC_002512.2 + 3358 0.68 0.973593
Target:  5'- uCCUCCCGAucGAGGAcggCGGCAgGGc-- -3'
miRNA:   3'- -GGGGGGCUu-UUUCUa--GCCGUgCCacu -5'
9095 3' -53.4 NC_002512.2 + 4432 0.66 0.991522
Target:  5'- -gCCCUGAAAGuguUCGGUACGGa-- -3'
miRNA:   3'- ggGGGGCUUUUucuAGCCGUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 4501 0.71 0.910764
Target:  5'- gUCCCCGAAGAGGAU-GGaCGCgagGGUGGa -3'
miRNA:   3'- gGGGGGCUUUUUCUAgCC-GUG---CCACU- -5'
9095 3' -53.4 NC_002512.2 + 4632 0.68 0.976111
Target:  5'- cCCUCCUGGcgGAGAagGaGCACGG-GAg -3'
miRNA:   3'- -GGGGGGCUuuUUCUagC-CGUGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 6794 0.67 0.981432
Target:  5'- cCUCCCCGucGAcgcagccgcggacccGGGucUCGGCcACGGUGGc -3'
miRNA:   3'- -GGGGGGCuuUU---------------UCU--AGCCG-UGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 6900 0.68 0.976111
Target:  5'- gCUCCCCGGcaggucgaGGAAGAcCGGCGCGuaGUGc -3'
miRNA:   3'- -GGGGGGCU--------UUUUCUaGCCGUGC--CACu -5'
9095 3' -53.4 NC_002512.2 + 7454 0.67 0.986136
Target:  5'- -gCCCgGggGAAGccgCGGCGCGGcUGc -3'
miRNA:   3'- ggGGGgCuuUUUCua-GCCGUGCC-ACu -5'
9095 3' -53.4 NC_002512.2 + 12070 0.67 0.978449
Target:  5'- gCCCgCCGucGAcGAUCGGgACGGcGAc -3'
miRNA:   3'- -GGGgGGCuuUUuCUAGCCgUGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 12379 0.66 0.993507
Target:  5'- aCCCCCCGAGcucgccuucGggCGGCgGCGGcGGc -3'
miRNA:   3'- -GGGGGGCUUuuu------CuaGCCG-UGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 13675 0.71 0.904785
Target:  5'- gCUCCCGGAcGAGGcgaCGGCcgcgGCGGUGAu -3'
miRNA:   3'- gGGGGGCUUuUUCUa--GCCG----UGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 14197 0.74 0.77256
Target:  5'- gUCCCCGAAccAGAagGGCAgcCGGUGAc -3'
miRNA:   3'- gGGGGGCUUuuUCUagCCGU--GCCACU- -5'
9095 3' -53.4 NC_002512.2 + 14895 0.71 0.892157
Target:  5'- gCUCCCCGAcGggcaucccGAGGUCGGCGuCGGUc- -3'
miRNA:   3'- -GGGGGGCUuU--------UUCUAGCCGU-GCCAcu -5'
9095 3' -53.4 NC_002512.2 + 15989 0.74 0.751186
Target:  5'- cUCCCCCGggGAgcagaacacgagauAGGUCGGcCGCcgGGUGGg -3'
miRNA:   3'- -GGGGGGCuuUU--------------UCUAGCC-GUG--CCACU- -5'
9095 3' -53.4 NC_002512.2 + 16389 0.67 0.978449
Target:  5'- gCCCUCGAAGucGAcgGGCGCGcaGUGAg -3'
miRNA:   3'- gGGGGGCUUUuuCUagCCGUGC--CACU- -5'
9095 3' -53.4 NC_002512.2 + 19418 0.67 0.984449
Target:  5'- gCUCCUCGAGAGacAGAUCGGgacgcaucCACGGg-- -3'
miRNA:   3'- -GGGGGGCUUUU--UCUAGCC--------GUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 19849 0.67 0.980613
Target:  5'- gUCCCCGGAgcgGAAGGcgcgaCGGUACGGcUGGa -3'
miRNA:   3'- gGGGGGCUU---UUUCUa----GCCGUGCC-ACU- -5'
9095 3' -53.4 NC_002512.2 + 20938 0.66 0.991522
Target:  5'- ---aCgGAGGAGGAcgcagUGGCACGGUGAg -3'
miRNA:   3'- ggggGgCUUUUUCUa----GCCGUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 21022 0.72 0.881427
Target:  5'- uCCCCCCGAgugccgauuaagcgaAAAacaGGAaCGGCGCGGcgcgUGAg -3'
miRNA:   3'- -GGGGGGCU---------------UUU---UCUaGCCGUGCC----ACU- -5'
9095 3' -53.4 NC_002512.2 + 21692 0.67 0.982611
Target:  5'- gCCCCCCGAucucAAGAgccaGGCgaACGGg-- -3'
miRNA:   3'- -GGGGGGCUuu--UUCUag--CCG--UGCCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.